YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76573832
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	158	0.83
Transmembrane Helix	159	178	0.85
Non-Cytoplasmic	179	188	0.65
Transmembrane Helix	189	209	0.93
Cytoplasmic	210	220	0.74
Transmembrane Helix	221	241	0.95
Non-Cytoplasmic	242	254	0.73
Transmembrane Helix	255	275	0.94
Cytoplasmic	276	330	0.85
Transmembrane Helix	331	348	0.87
Non-Cytoplasmic	349	369	0.78
Transmembrane Helix	370	389	0.93
Cytoplasmic	390	397	0.84
Transmembrane Helix	398	418	0.94
Non-Cytoplasmic	419	424	0.85
Transmembrane Helix	425	448	0.88
Cytoplasmic	449	458	0.78
Transmembrane Helix	459	480	0.83
Non-Cytoplasmic	481	492	0.91
Transmembrane Helix	493	514	0.91
Cytoplasmic	515	553	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTATKLSRSL SSSSNVTTPL LKKDDYTITI VPSNSSSEAN EIGDNPFLDP KVEEYYREVY  60
   61 QTSNYECYPA FDPQFEWTKE EEQNVVRKLN YRVALAACLL FVGLQIDRGN LQQAISDNML 120
  121 NDLALTTNEY NLGNTLFYSC FLLAEVPSQL ISKSLGPDIF IPIQMCAWSV VAISQAALSG 180
  181 KVSFYLTRAL IGMLEGGFIA DLVLWLSYFF TSKELPIRLS WFWTTLAVVQ IGSSLLACGI 240
  241 LKMRGLAGLE GWRWLFLIEG VITFFIGLSA FYLMVPSAVE TRNWMHPKGW FSDREEKIVV 300
  301 NRILRDDPTK GSMNNRQALG IKELGASLMD YNLWPIFAIG FIAHIGKSTM GTYFTLMNKE 360
  361 LGFSTFETNL LAIPPSILHI SFLLGITWLS ERANERSFVS LVAPLYAVPL IAIIRWWHGS 420
  421 GKQVWATWML STLFLGQPYI HAICVAWVSR NSNSVGSRSI CSALYNMFVQ MGAIIASNIY 480
  481 REDDFPLYKK GNTILFLIEL SLIPLLLFTK CFYIWKNNQK GKLWNKMTEE EREYYRKHST 540
  541 DRGNERLDFV FEH