YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.4357
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSRYLLRTH SRVLFRPRNT TTISATRANF ISRRHVSQYN YNQTYAAYNQ PKTPFWKKLV  60
   61 YATLGLGIIS GYVYYMWWPK HTFPSSIAKF LRKGLWAESD RGEFDYQLAL KYYLQALEHA 120
  121 NEIGLDPLSD EYTGIQLKIG EMFERLNMLT DAAYIYNEIA TLYLTVLTAP RDSPEGQRIK 180
  181 DRKHRRHLIQ KDLRIAIKLV SLNPTNPSLA KAILITHLII AQDEVNKLMG SSLSSSNKLN 240
  241 LVNKIDPNDK SSSTNTSNGA YTAVLDNDTI VITNNKTGEE NRIKKTPEVW EPFTDEFFNA 300
  301 MDLLSAVCIT SGDLAMATKV KIAMNESMLL ADIEPSKMLL SQCNLGSLLY MQAEELEAQE 360
  361 ISMTRKFSEL SGIEYDQLLE SHQTQMHLQH SETNPEDKTD SNSNPNSKLI MEKLRETVPI 420
  421 SDQEAFATVT RSRSVCLQLA IKSYESVLQF AKSFPQDFVK QHNEINETVA LATYGLGVIN 480
  481 LHLSHYEKAE RLLRESRVRA KSCDYGTLLP MIEKELEKLF NEKKSLTKDE NDNSKLKKKK 540
  541 HSLHDIEMDI TLNK

Type	Start	End	Confidence
Cytoplasmic	1	58	0.91
Transmembrane Helix	59	78	0.89
Non-Cytoplasmic	79	554	0.98