YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.11834, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.98
Transmembrane Helix	20	42	0.88
Non-Cytoplasmic	43	67	0.92
Transmembrane Helix	68	89	0.91
Cytoplasmic	90	97	0.88
Transmembrane Helix	98	116	0.89
Non-Cytoplasmic	117	121	0.54
Transmembrane Helix	122	143	0.86
Cytoplasmic	144	153	0.80
Transmembrane Helix	154	174	0.90
Non-Cytoplasmic	175	189	0.81
Transmembrane Helix	190	209	0.92
Cytoplasmic	210	275	0.97
Transmembrane Helix	276	298	0.86
Non-Cytoplasmic	299	311	0.83
Transmembrane Helix	312	334	0.89
Cytoplasmic	335	341	0.89
Transmembrane Helix	342	363	0.93
Non-Cytoplasmic	364	370	0.85
Transmembrane Helix	371	394	0.89
Cytoplasmic	395	407	0.85
Transmembrane Helix	408	430	0.81
Non-Cytoplasmic	431	436	0.79
Transmembrane Helix	437	457	0.94
Cytoplasmic	458	647	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELTELHPH HHVQIKESIL VGKALLNFTT FFVTLGILVM GFEQSVYAPI ITNKYFKQYY  60
   61 HNPSPTEIGF MIAILEIGAL FSSIIAGKIG DLVGRKRATR YGAVFFYIGG FIQCISPNMF 120
  121 ILCIGRLLGG FGIGFLTTIV PMFQSEISPA EARGFYACVE FTGNILGYAI GIWLDYAFSY 180
  181 LENDYSWKAP LIVQFLLGVV LWLGTFIVVE TPRWLLNHDH DLEGMIVIAD LYADGDVEDD 240
  241 HAMSEYRNIK ESVLIDRIEG GERSYEYLFK RYAKRLSVAC FGLMFAQLNG INLISYYAPM 300
  301 IFEEAGWVGR QAVFMTGING IIYVISTIPP WYLVDSWGRK PLLMSGALIM GIPFCIAGYS 360
  361 LSLNNEYTST IVVTSIIISN FGFGFSWGGI GWLLPAEVLP LSVRSKGAAL ATATNWFSNF 420
  421 VVGLASPILL DQIKWKTYFI PAISCFISFF AVWYLFPETK GLSLEEMGSV FDDKSSIFSH 480
  481 HASGSVGGSS SSIFNYGATN DLNRRTSMTN DSTPSIAGAL PGAVPGAIDS IHQSAASMAR 540
  541 NPTSNNNQQL DGIITGAAPP PMPINTNNNN IIKPVKSDNA ADTLSLDSGF GGSQSDIVQE 600
  601 IEPPSLEEIL KYKIQKQIEP NAFIATFHWL FSKKGQPNDE ESRLLQQ