YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.9810, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	71	0.96
Transmembrane Helix	72	87	0.92
Non-Cytoplasmic	88	105	0.78
Transmembrane Helix	106	128	0.89
Cytoplasmic	129	148	0.90
Transmembrane Helix	149	172	0.87
Non-Cytoplasmic	173	179	0.73
Transmembrane Helix	180	200	0.92
Cytoplasmic	201	211	0.89
Transmembrane Helix	212	235	0.87
Non-Cytoplasmic	236	256	0.91
Transmembrane Helix	257	276	0.94
Cytoplasmic	277	360	0.96
Transmembrane Helix	361	382	0.87
Non-Cytoplasmic	383	413	0.86
Transmembrane Helix	414	436	0.89
Cytoplasmic	437	454	0.89
Transmembrane Helix	455	477	0.87
Non-Cytoplasmic	478	482	0.71
Transmembrane Helix	483	504	0.90
Cytoplasmic	505	552	0.96
Transmembrane Helix	553	574	0.94
Non-Cytoplasmic	575	584	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTTSSSTNE SIRPKNNHTT ISTTGVSTTL DQTTTTRFRN NYDDNNNNSV ISKDSSTFAY  60
   61 VVNRSKSVLK KYGSFVGPGM LISVAYMDPG NYATGITAGA SNEYSLLFIV FLSNVIAIFL 120
  121 QSLCIKLGSV TGYDLARCCR EYLPKQLNWV LWFLAECAII ATDVAEVIGS AIALNILLKI 180
  181 PLPAGVVITI IDVLFVLMAY RADTSSMKFV KIFEYAVGAL VMVVVVCFAV ELSQIHASAR 240
  241 DIFRGFVPSK QMFDGNGMTI ATSIIGSTVM IHSLFLGSGL VQPRLRDFDV KHGYVNLDDI 300
  301 LNKNDQPQFP VIESSTTTPS EKKDDAKNNV KVSMYEKEAD YFYHYYKPSY QSIKYSLKYS 360
  361 IVELTITLIT LALFVNSAIL IVSGSTLYGT EEAIDADLYT IHDLLSRSLA PAVGTIFMVA 420
  421 LLASGQSAGI VCTIAGQIVS EGHINWTLKP WLRRLVTRSI SIIPCLIISV CIGRNGLGIA 480
  481 LNISQVVISI LLPPLTAPLI YFTCSKKIMK VELNENDEAI GVTGQEEEVE DEESNDQDTN 540
  541 GSRKKYKYMT NNWITSIVAV IIWFFVSTLN VYAIYEMAKN GVSG