YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.3208, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	92	0.96
Transmembrane Helix	93	111	0.82
Non-Cytoplasmic	112	132	0.82
Transmembrane Helix	133	152	0.78
Cytoplasmic	153	163	0.63
Transmembrane Helix	164	182	0.93
Non-Cytoplasmic	183	188	0.81
Transmembrane Helix	189	211	0.87
Cytoplasmic	212	222	0.83
Transmembrane Helix	223	245	0.91
Non-Cytoplasmic	246	255	0.89
Transmembrane Helix	256	278	0.91
Cytoplasmic	279	327	0.97
Transmembrane Helix	328	350	0.90
Non-Cytoplasmic	351	362	0.89
Transmembrane Helix	363	384	0.90
Cytoplasmic	385	390	0.88
Transmembrane Helix	391	411	0.94
Non-Cytoplasmic	412	418	0.86
Transmembrane Helix	419	440	0.93
Cytoplasmic	441	448	0.81
Transmembrane Helix	449	471	0.88
Non-Cytoplasmic	472	480	0.85
Transmembrane Helix	481	504	0.91
Cytoplasmic	505	546	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQQDDLEKY QDIDTTNNDI KPIISFTKED IEDGKNPKNH HVITTITSSD GKKINITNDV  60
   61 DQAMEAVLSN DNEPPINFDD ISSTEWKKLL LKIDLYLIPI MCLLYCFQFM DKMTTSYASI 120
  121 LGLRQELKMV GDMYSWTGTS FYLGYLVFEF PASMLLQRFP VTKTVSIFII LWGVILCLHS 180
  181 VPNQYGGFIT LRTLLGMLES AVTPAFTIIT SQWYKKEEQF LRTAFWFGSN GMGNIIGSAI 240
  241 AYGLYQNQIN YSIDAWKLIF IVTGCLTIFV GMIIMVHIPD TPTKAWFLND KEKRMVVERI 300
  301 RTNQQGFGNT HFKKHQFIEA VMDHRTWLFI IYSISSNLPN GGLTSFSAIL LNGDFGYNLT 360
  361 ESLLMQMPPG AIAVVGCIIL AYCGKFTSSR LIMGMISQIV VIICNCLFTF AKNDKARLAG 420
  421 LYISAVGPVG FICCISCVSS NVAGHTKKIT ANAMFLIAYC VGNLVGPQTF IESQAPNYVG 480
  481 AKIAIVICSC VSFITLVLIY LSYYWDNKSR DNKARNSEDA DLMNHIENYE FADLTDKENL 540
  541 NFRYSL