YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.3195
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	97	0.99
Transmembrane Helix	98	119	0.91
Non-Cytoplasmic	120	126	0.75
Transmembrane Helix	127	152	0.79
Cytoplasmic	153	173	0.61
Transmembrane Helix	174	197	0.78
Non-Cytoplasmic	198	206	0.70
Transmembrane Helix	207	228	0.90
Cytoplasmic	229	236	0.72
Transmembrane Helix	237	260	0.89
Non-Cytoplasmic	261	281	0.75
Transmembrane Helix	282	301	0.76
Cytoplasmic	302	319	0.88
Transmembrane Helix	320	341	0.90
Non-Cytoplasmic	342	365	0.88
Transmembrane Helix	366	390	0.81
Cytoplasmic	391	417	0.92
Transmembrane Helix	418	437	0.96
Non-Cytoplasmic	438	445	0.75
Transmembrane Helix	446	467	0.91
Cytoplasmic	468	484	0.92
Transmembrane Helix	485	510	0.88
Non-Cytoplasmic	511	526	0.91
Transmembrane Helix	527	547	0.88
Cytoplasmic	548	599	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTKEKDEFN IGSLQNSPES STNMSPDVIT TPISKWQAFK DSFKPPEQKP LASSSSSTSS  60
   61 LSASSPHHND VANDYDIEKS LRPDQQGELK RELKNRHVQM IALGGSVGTG LLIGSGGALH 120
  121 QGGPAALLIA WGITGTMVFC IIHSLGELCV AFPVNGAFST YANMFVDSSW AFAVGWNYAI 180
  181 MWLIVLPLEL VAAAMCITYW NDEINPASWV AIFYVLIVVI NIFGVKYYGD AEMYLTIFKI 240
  241 IAIVGFIILG VVLVCGGGPT HEFIGNKYWK QDGAFANGFK GVATTFVTAS YSMAGSEMVG 300
  301 LASAEVANPQ KSLPKAIRQV FWRIFLFYFL SLTFIGLLVP SNSPQLLGAS GTSASPFVIA 360
  361 IKNGGIYALP SIFNACILLS VLSVGNSAVY GCSRTIQSLG AQGLGPKIFA YVDRKGRPLG 420
  421 GLVMSAIFGL LCFLSAYHDE ATIFNWLLSV AGLATIFSWF NIGLCHVRFR LALRKQGRSL 480
  481 QELTFTALTG VWGSVYSMIF LCVVLVIQFW TALFPLGSKG KANAENFFQN YLGAVVILIF 540
  541 YVGHKLYTRN WKLCVKLEDI DLDSGRRSFD LDLIRAEIEE EKAANKAKPL YKRLWNYWC