YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.1393
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNDPTPILD NAKDSSQVPD FSDIVQGEDL EFRQSKAPTF PVVHKIEKLG EIPPPTILSR  60
   61 LSNNQLITIA GAASGFLAGI VVCPLDVVKT RLQAQGTVGE NLKYNGFLGT FKTILREEGI 120
  121 RGLYRGLVPT MIGYLPTWTI YFTVYEQAKR FYPSFLHQYN IENPSIIHFC SALTAGMTSS 180
  181 IAVNPIWVVK TRLMVQTGKE GQQVYYRGTF DAFKKMYQHE GLKVFYSGLI PSLFGLLHVG 240
  241 IHFPVYEKLK SLLHCNLLSN DSGSNGVLWR LIAASSFSKM VASTVTYPHE ILRTRMQLRR 300
  301 DKGKSKSLVK TVSSIFQKDG LRGFYSGYFT NLARTLPASA VTLVSFEYFK TYLLEINGRL 360
  361 KSKFTH

Type	Start	End	Confidence
Non-Cytoplasmic	1	65	0.55
Transmembrane Helix	66	85	0.60
Cytoplasmic	86	121	0.86
Transmembrane Helix	122	144	0.82
Non-Cytoplasmic	145	164	0.92
Transmembrane Helix	165	188	0.90
Cytoplasmic	189	223	0.93
Transmembrane Helix	224	243	0.91
Non-Cytoplasmic	244	266	0.88
Transmembrane Helix	267	289	0.63
Cytoplasmic	290	366	0.71