YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.97
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	68	0.99
Transmembrane Helix	69	90	0.90
Non-Cytoplasmic	91	98	0.66
Transmembrane Helix	99	122	0.74
Cytoplasmic	123	145	0.69
Transmembrane Helix	146	168	0.77
Non-Cytoplasmic	169	176	0.75
Transmembrane Helix	177	196	0.95
Cytoplasmic	197	210	0.74
Transmembrane Helix	211	232	0.86
Non-Cytoplasmic	233	256	0.91
Transmembrane Helix	257	280	0.86
Cytoplasmic	281	296	0.92
Transmembrane Helix	297	318	0.91
Non-Cytoplasmic	319	348	0.93
Transmembrane Helix	349	368	0.88
Cytoplasmic	369	392	0.85
Transmembrane Helix	393	414	0.92
Non-Cytoplasmic	415	422	0.85
Transmembrane Helix	423	445	0.90
Cytoplasmic	446	465	0.89
Transmembrane Helix	466	488	0.90
Non-Cytoplasmic	489	498	0.84
Transmembrane Helix	499	521	0.93
Cytoplasmic	522	571	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEDYEKYRM GSSNESHQKS VQPISSSISK SNKKTKHQTD FVQDSDIIEA SSINDEFGEV  60
   61 KRDLKARHVS MIAIGGTIGT GLFISTGSLL HTTGPVMSLI SFLFVTTICF SVTQSLGEMA 120
  121 TYIPISGSFA QFVTRWVSKS CGAANGWLYW FSWAVTFGLE LSVVGQVIQF WTDAVPLAAW 180
  181 ISIFFVILTI FNFFPVKFYG EVEFWIASIK IIAVFGWIIY AFIMVCGAGK TGPVGFRYWR 240
  241 NGYAWGDGIL VNNNGKYVAA FVSGLINSIF TFQGTELVAV TAGEASPRAL RSAIRKVMFR 300
  301 ILVFYVLCML FMGLLVPYND PKLTQDGGFT RNSPFLIAME NSGTKVLPHI FNAVIVTTII 360
  361 SAGNSNIYSG SRILYGLAQA GVAPKFFLRT NKGGVPFFAV AFTAAFGALG YLACSSQGNK 420
  421 AFTWLLNITA TAGLISWGFI SVSHIRFMKT LQRRGISRDT LPFKAFFMPF SAYYGMVVCF 480
  481 IVVLIQGFTV FWDFNASDFF TAYISVILFV VLWVGFHFFF YGFGKDSFKM SNILVPLDEC 540
  541 DIDSGVRDIN DAEFDIPPPK NAWDKFWAIV A