YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.11922, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.74
Transmembrane Helix	10	28	0.54
Non-Cytoplasmic	29	86	0.66
Transmembrane Helix	87	107	0.77
Cytoplasmic	108	116	0.77
Transmembrane Helix	117	144	0.76
Non-Cytoplasmic	145	175	0.60
Transmembrane Helix	176	202	0.80
Cytoplasmic	203	212	0.51
Transmembrane Helix	213	237	0.81
Non-Cytoplasmic	238	269	0.70
Transmembrane Helix	270	292	0.89
Cytoplasmic	293	300	0.68
Transmembrane Helix	301	320	0.92
Non-Cytoplasmic	321	327	0.76
Transmembrane Helix	328	349	0.92
Cytoplasmic	350	358	0.83
Transmembrane Helix	359	381	0.85
Non-Cytoplasmic	382	560	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLTPVQYGL LFLNLLYRLY SGLYMIIADC DETFNYWEPL NLLLRNFGKQ TWEYSPEYKI  60
   61 RSYAYLIPYF ILGKVCQLFD FQPATVFFII RTLGIVGFTC YCEWKLFCSL RRYSASIANW 120
  121 FLLLNTIAPG MSHAGVALLP SSLAMQTTML ANSFILEAIK SKNHQEKQTS ILRATFWYFI 180
  181 GGILGWPFAL ALGLPVGFYT IYQSVVIGNL PLTALFRVLS VLLTVVVPIM IIDSFFYQKV 240
  241 SFIPINIVLY NVFGGEGEGP EIFGVEPFSY YIMNLLLNFN AIFPLAVIGV FWNPILTHVK 300
  301 AFSSFVSLQL VIWFGIFFAQ PHKEERFLYP VYSLITLSAA ILLSKLTIGS KNFASKPIYR 360
  361 VFQLGFILSI VVVSSLRILN LVENYGAPLQ TFNTVAQLED LGQSLQSPIN VCMGKEWYHF 420
  421 PASFFLPDSY RLRFVDSGFD GLLPGDFFES TNVIDSTTFI PKNMNNKNQF EKDKVIDLEH 480
  481 CHYYVDNSQL NSYPQLVYPN LSTTGKWEVI TCNKMLDPNE KHSTIGKLLY VPTWLRGIIP 540
  541 YDVGYMEFCL LKKQDIEDTV