YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PRM1_CANAL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRNYLNLPE ILTQVYLNKY AILLILILIK LILLETSILD NLNSVLLDNS ICDNGEIQPV  60
   61 LNTVHYMIVD SLQTLEAAGI VSIILTLKVI KQLALFFIEL FFGTYICLLN AALKGSTEVA 120
  121 LDASEGVIRA VNATVVSATN DIESALKGLS SIINDLVTGF NAIKNMFTGS KSDPTQYQNK 180
  181 INITLGDLKS KIMIPSEVLT KLDNFKNSSL YGLSQLGNGT QTIVSTPFEL AIKKLNTMKS 240
  241 SYNFTTGAPS PINFREECLK DMSKLKDVQT DLAKLVEKIS KWLFIGLVLA MVGSILYVSY 300
  301 IQWRHWRRMD KFINETGIDK EVQFRNQYNI YNNFLIYTIV KRMGIDLNER AIWMLSFMFS 360
  361 KISRNVFFFG IMGVVSVVAQ YILLNSVQSS MNNHIKSFDI TSNSTSMSAS TIYLRDMNTY 420
  421 IDDTQDKLNQ ELFSGIKEIS VSLNSTIVEF LDKLNETLSD IFGSTPLAGP INTVVYCTIG 480
  481 RKLEKVEKGL TWMNDNLNIN IPSISRDIED GLSHMTFLQP QSVLARANKI IDLYRKSILL 540
  541 ELYISLGLLG VWLFQIFVGS ATLTIRYWNS TRQGNNSYAI SSPHELSEQE KQVYGYPLSH 600
  601 PLIDGKDLTT SSSFYPTTEE KSK

Type	Start	End	Confidence
Cytoplasmic	1	15	0.84
Transmembrane Helix	16	34	0.83
Non-Cytoplasmic	35	71	0.80
Transmembrane Helix	72	87	0.43
Cytoplasmic	88	92	0.39
Transmembrane Helix	93	113	0.46
Non-Cytoplasmic	114	281	0.60
Transmembrane Helix	282	301	0.96
Cytoplasmic	302	361	0.60
Transmembrane Helix	362	384	0.88
Non-Cytoplasmic	385	541	0.57
Transmembrane Helix	542	565	0.74
Cytoplasmic	566	623	0.40