YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|87045977
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	59	0.95
Transmembrane Helix	60	78	0.94
Non-Cytoplasmic	79	86	0.74
Transmembrane Helix	87	108	0.82
Cytoplasmic	109	134	0.84
Transmembrane Helix	135	157	0.74
Non-Cytoplasmic	158	168	0.80
Transmembrane Helix	169	193	0.83
Cytoplasmic	194	229	0.94
Transmembrane Helix	230	249	0.90
Non-Cytoplasmic	250	265	0.90
Transmembrane Helix	266	285	0.91
Cytoplasmic	286	298	0.72
Transmembrane Helix	299	320	0.90
Non-Cytoplasmic	321	381	0.92
Transmembrane Helix	382	401	0.90
Cytoplasmic	402	436	0.91
Transmembrane Helix	437	457	0.95
Non-Cytoplasmic	458	463	0.75
Transmembrane Helix	464	487	0.90
Cytoplasmic	488	550	0.83
Transmembrane Helix	551	570	0.79
Non-Cytoplasmic	571	620	0.69
Transmembrane Helix	621	640	0.93
Cytoplasmic	641	649	0.66
Transmembrane Helix	650	667	0.75
Non-Cytoplasmic	668	671	0.61
Transmembrane Helix	672	690	0.81
Cytoplasmic	691	699	0.76
Transmembrane Helix	700	723	0.89
Non-Cytoplasmic	724	747	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKEAEFVKT ISKEGDPQVD VLERDAESNS ENALEPDVEE LPKVVREIVP LEDDPTIPVL  60
   61 TFRYFILSII FIIPGAFIDT MNSFRTTSAA YSIFFVQIAS HWCGKWLARI LPKKQVGFGR 120
  121 LSFNLNPGPW SIKETALITI TANSGATGSM GTNPLALAEL FYGETVNPAV AIFFMWMIVF 180
  181 IGYSFAGIAR NFLLYDPQFT WPQALMQTTL FQTQSKSDKD AKQASKQMKV FFFVLIGLCI 240
  241 WQFFPEYIFP MTSSLAFLCW VAPENYTANF IGSGLGGMGF LNLSLDWSNI TSSIMLYPYW 300
  301 VQVVQFAAFV LGAWILIPAA KWGDLSSYPY GLMSNSLFLG NGTKYPTTEL LTPNLRLNET 360
  361 RYEELGPVHL GAQRAWNMFF DYAAYVSGFM WVVAFGYKSL SGSLKRLVKS RKQKGSINLQ 420
  421 YTDRLNKLQA AYEEVPLYWY AILFLCAFVT LLVIFATNSL FMPWWCLLVG VAFGAVIVTP 480
  481 LVWLYALSNF QLPIGTFNEL LYGYMIQNKT SRHPAGAMVY GAVGGDLFYR AQYILNDQKI 540
  541 AHYMHISQRA VFFSQIFGEL IGVPINYAAL RWVISSKRDF LDGTKVDKLH QWTGQTIVSY 600
  601 NTNAVQYVIL GPDRLFKNYP VLPYGFLLGA GAPLVLYLLH RLFPKSKLKF HLWNTTVFFS 660
  661 TMSTFYGNLS TGYFSRFIGG TITMFWAFRY KHSLWKKYNY LLAAALDTGL NLSILLIFLF 720
  721 FSAGKTVNFP EWWGNNGKSV ERCFAMS