YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.13117, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	28	0.97
Transmembrane Helix	29	51	0.91
Cytoplasmic	52	58	0.88
Transmembrane Helix	59	79	0.94
Non-Cytoplasmic	80	117	0.93
Transmembrane Helix	118	138	0.92
Cytoplasmic	139	146	0.82
Transmembrane Helix	147	167	0.92
Non-Cytoplasmic	168	183	0.80
Transmembrane Helix	184	202	0.92
Cytoplasmic	203	219	0.89
Transmembrane Helix	220	239	0.91
Non-Cytoplasmic	240	250	0.87
Transmembrane Helix	251	272	0.92
Cytoplasmic	273	280	0.81
Transmembrane Helix	281	301	0.91
Non-Cytoplasmic	302	305	0.70
Transmembrane Helix	306	326	0.88
Cytoplasmic	327	337	0.86
Transmembrane Helix	338	362	0.87
Non-Cytoplasmic	363	382	0.92
Transmembrane Helix	383	405	0.96
Cytoplasmic	406	480	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGNFTGTGT GGDVFKVDLN EQFDRADMVW IGTASVLVWI MIPGVGLLYS GISRKKHALS  60
   61 LMWAALMAAC VAAFQWFWWG YSLVFAHNGS VFLGTLQNFC LKDVLGAPSI VKTVPDILFC 120
  121 LYQGMFAAVT AILMAGAGCE RARLGPMMVF LFIWLTVVYC PIAYWTWGGN GWLVSLGALD 180
  181 FAGGGPVHEN SGFAALAYSL WLGKRHDPVA KGKVPKYKPH SVSSIVMGTI FLWFGWYGFN 240
  241 GGSTGNSSMR SWYACVNTNL AAATGGLTWM LVDWFRTGGK WSTVGLCMGA IAGLVGITPA 300
  301 AGYVPVYTSV IFGIVPAIIC NFAVDLKDLL QIDDGMDVWA LHGVGGFVGN FMTGLFAADY 360
  361 VAMIDGTEID GGWMNHHWKQ LGYQLAGSCA VAAWSFTVTS IILLAMDRIP FLRIRLHEDE 420
  421 EMLGTDLAQI GEYAYYADDD PETNPYVLEP IRSTTISQPL PHIDGVADGS SNNDSGEAKN 480
  481