YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.9933, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	56	0.97
Transmembrane Helix	57	78	0.84
Non-Cytoplasmic	79	101	0.82
Transmembrane Helix	102	121	0.84
Cytoplasmic	122	128	0.87
Transmembrane Helix	129	148	0.95
Non-Cytoplasmic	149	153	0.89
Transmembrane Helix	154	177	0.90
Cytoplasmic	178	187	0.91
Transmembrane Helix	188	209	0.93
Non-Cytoplasmic	210	223	0.86
Transmembrane Helix	224	243	0.97
Cytoplasmic	244	309	0.98
Transmembrane Helix	310	333	0.90
Non-Cytoplasmic	334	343	0.86
Transmembrane Helix	344	365	0.89
Cytoplasmic	366	373	0.86
Transmembrane Helix	374	395	0.94
Non-Cytoplasmic	396	402	0.79
Transmembrane Helix	403	423	0.94
Cytoplasmic	424	432	0.87
Transmembrane Helix	433	457	0.85
Non-Cytoplasmic	458	473	0.88
Transmembrane Helix	474	493	0.95
Cytoplasmic	494	501	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNSVSEAES RGHKSLEIEE YQIEEYQIDN HTNDESSEIL DPHQLNKVYR KLDLRIIPAL  60
   61 WCLYFLTSFG SNCYGLTLTM NRAEGHSLAQ QLHLTSKDTS TASALYYVGY IIFDVPMNLI 120
  121 MTKVSPQTWL ARIVITVGLV YTCYHVLHNA GGVIAVRFIS GVVGAGTWPG LSYYVSLWYP 180
  181 NDRSTRRIGY YFTAAQISAA VAGLVSAGFQ KMDGVHGYTG WQWMYLVYGV ITMTVGIALL 240
  241 WWLPDRPFIG VKSESNRLVE FYRKFTTPPH PLNEQEKELH RKDLEHRYKL LKWTWKDVVN 300
  301 IITDLRIWPL IIMYFGVVGT GFGLAVFGST IIATNNPNLT SIQVSLLYAP IWLFDLGGIL 360
  361 IITPFADRFK KFRALIFSGA CVIIIVGMIV TTFAHGSWNK YGGLLIAGFG LGPTVPICMS 420
  421 WSAEIFQKRY GDVGNAVSAA LVSGLGNLGS VTSTYALYSG WPEDKARLYR NSNMMLVLML 480
  481 GVSIIASGVC QLIKDKVRQP K