YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.1867, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	42	0.95
Non-Cytoplasmic	43	51	0.82
Transmembrane Helix	52	77	0.90
Cytoplasmic	78	90	0.86
Transmembrane Helix	91	112	0.89
Non-Cytoplasmic	113	121	0.83
Transmembrane Helix	122	145	0.91
Cytoplasmic	146	154	0.89
Transmembrane Helix	155	178	0.89
Non-Cytoplasmic	179	191	0.88
Transmembrane Helix	192	214	0.89
Cytoplasmic	215	226	0.86
Transmembrane Helix	227	248	0.87
Non-Cytoplasmic	249	268	0.75
Transmembrane Helix	269	291	0.91
Cytoplasmic	292	312	0.89
Transmembrane Helix	313	332	0.90
Non-Cytoplasmic	333	351	0.87
Transmembrane Helix	352	375	0.90
Cytoplasmic	376	399	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPSFGKRVL SFLKVELIEE FHPVFFVSFL GTGITGNILY GFPYPAQWLK VLGIIMFCLT  60
   61 VLLFVLVTTC LVVSWVYYPS RIYRYHIDPT LSIYFAVYSM GYNTIINGIH LITHGKYPIF 120
  121 LWTLWWIGVA VALYNAIFIF FISFLSKLNK HNLDAISGVA LMPVVCPSVV SSSGHLIAVN 180
  181 LPNSNLKKIT EITCLMLLFV SLVCFHGVGA LYMARLILRK IPATDHIFSQ FLPVGFTGQC 240
  241 SYSIMLFGSN MLTFIPDKTL GQMFFVSSAL LSGCLLAGGY VYLFLAIASV LSKIRPFARH 300
  301 PNPKYTSSKL GLIIWNKGFW VMTFPIGTMS LANFEISKGV DGQYQLEFFK VMSAIFGVCL 360
  361 FMICLANLVG LSWCIVQKIR QEYLQYKVDT SIVEVESKV