YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.731, orf19...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.86
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYHILLLIH VALAVVPNIP KISSQLSPNP HYSLPNLLSI ESKEDINNFD ISNNIQFDNG  60
   61 RLLLGELGSI WGKYKIPTLN KPWTIELIFR STGTKEDRKY EDNSLNVWLL NEDNNNLPFD 120
  121 SFDGFETSIN NEGQIPGVKL YNNDGSQNII HDASHALGTC KFQYLDSDVP FTLRISYDAN 180
  181 SWFKIQMDNN LCFRTNQISI PFQELKLGIT SKINQQSNEK FEILSLKTWE LLTADAIDDH 240
  241 GLMIGDEIKI DVETEVKNDN QVKPNHIRES LMERAQRLRK EAIDSERQNL KNQDSNTNSQ 300
  301 LDLILSKLNY LEVSLTGLNG GEDDSQILSI NKEITGLNNV FAELKSTVTD TKQAVVDLQN 360
  361 VLVKQYSQML DSIAQLNQKV IGEVREQHYG MEELSRKVDL LMNNHKEIAY QYEKTRQDTQ 420
  421 GEASKSGNVI DKLLKWILFP LVLILLVLVI FVYRLRHDIK HSKLL

Type	Start	End	Confidence
Signal Peptide	1	24	0.82
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	435	0.99
Transmembrane Helix	436	455	0.95
Cytoplasmic	456	465	0.95