YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.1313, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGVIGAAPG TQANQDYFET WRNSPEYRAV QNELHRLEEM PGLASGEKEP DTNQAYAASF  60
   61 WKQYIFVVHR LFQQYWRTPS YIYSKFAMAV LCSLFNGFTY YKSQNSMQGL KNQMLSIFSM 120
  121 FVVLTTLAQQ YIPLFVTQRD LYEARERPSK TFSWLAFIAA QITAEIPYQV LAATVSFFSW 180
  181 YYPVGLYRNA VYSGAVTHRG VLMWLIMTLM FIYSSTLAQF CISWNQLADY AANWISLLLT 240
  241 ISMIFCGVIA TKDSMPKFWV FLYRCTPLTY LTSAMMSIGL GDSFVKCAPT EILTFPPQTP 300
  301 GVQKCQDYMG AYISIAGGYL LNPEATDNCK FCIMDKTNQF LDFMNISIHN FGRDTGIFIV 360
  361 FIVFNMAATV FSYWLFRVPK GNREKGSFFD KLPFLNGGGD TNHENV

Type	Start	End	Confidence
Cytoplasmic	1	80	0.68
Transmembrane Helix	81	101	0.82
Non-Cytoplasmic	102	113	0.52
Transmembrane Helix	114	135	0.85
Cytoplasmic	136	151	0.49
Transmembrane Helix	152	168	0.62
Non-Cytoplasmic	169	169	0.14
Transmembrane Helix	170	184	0.67
Cytoplasmic	185	199	0.50
Transmembrane Helix	200	222	0.88
Non-Cytoplasmic	223	229	0.60
Transmembrane Helix	230	251	0.92
Cytoplasmic	252	259	0.62
Transmembrane Helix	260	280	0.63
Non-Cytoplasmic	281	354	0.89
Transmembrane Helix	355	376	0.93
Cytoplasmic	377	406	0.91