YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.6956, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	79	0.94
Transmembrane Helix	80	98	0.64
Non-Cytoplasmic	99	117	0.68
Transmembrane Helix	118	137	0.69
Cytoplasmic	138	145	0.68
Transmembrane Helix	146	166	0.89
Non-Cytoplasmic	167	172	0.77
Transmembrane Helix	173	194	0.86
Cytoplasmic	195	207	0.79
Transmembrane Helix	208	229	0.93
Non-Cytoplasmic	230	238	0.89
Transmembrane Helix	239	262	0.89
Cytoplasmic	263	310	0.96
Transmembrane Helix	311	334	0.84
Non-Cytoplasmic	335	348	0.86
Transmembrane Helix	349	368	0.89
Cytoplasmic	369	375	0.79
Transmembrane Helix	376	395	0.93
Non-Cytoplasmic	396	404	0.74
Transmembrane Helix	405	427	0.91
Cytoplasmic	428	436	0.79
Transmembrane Helix	437	455	0.93
Non-Cytoplasmic	456	464	0.77
Transmembrane Helix	465	488	0.92
Cytoplasmic	489	525	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEKKELKNQ TDIEPIISFT KEDIEDNKPH VLTTIISPSG KEIAITNDVD QAMKLALEHK  60
   61 GETIELDSVQ ADKLLRKIDL YLLPVMCLLY CFQFMDKLTT SYASVLGLRK ELKMQGDMYS 120
  121 WTATAFYLGY LVFEFPASML LQRFPVAKTV SVFIILWGMI LALHSVPQYP GFVALRTILG 180
  181 MLESSVTPAF TIITSQWYRK EEQFLRTSWW FASNGIGTIV GSAIAYGLFE NDGNYSLPAW 240
  241 KLVFIVTGCL TIFLGFIVMV HIPDTPAGAW FLTDEEKLMV VERIRTNQQG FGNTHFKKHQ 300
  301 FIEALTDHRT WLFLLFALSN NIPNGGLTSF GTILLNEDFG YTPSKSLLMQ MPQGAVEIVG 360
  361 CVLLAWLCKF LPSRMLMGIT ATSITVLAEC LLAFCKSNSA RLAGFYLYLL GPLGFICCLS 420
  421 CVSSNVVGHT KKVTTNAMYL IAYCVGNLIG PQTFISTQAP GYTGAKVAIV VCGFVSLFTL 480
  481 IAIYISYYIE NKKRNSRPPV DMSHIENYEF ADLTDKENPN FRYSI