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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: orf19.9678, orf1...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.70
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIDRQTLVF FIIMFIFLSL PSGNEQPHSD KDRETLQTYQ QSIRNSSSIL QNSTYASGYG  60
   61 NITGYQLSYK DQLQGKSVAD WPIHEFSPSH PWVESQEYSI LPDEISQRVR KFWGISPVKD 120
  121 KAYLLNISGR ADGEFQLIES KVKPTKLSIP KYLKEYYKSR ENSFTSDEPT EDNREYFKKP 180
  181 IDKKGNVTTN EGVVSIAIKG SQYNFDDPKL SRFVGPEDKV DNAICVSMDL DIKDYPEIED 240
  241 HSLVLNGVYF QETGSLIGVT NSAKFYGNYG LSHLTMGDKN FAIAKTLMTQ FSNMTNDNEL 300
  301 TMDDMNYGIV KAHEQCEYIA FIQFAKTNFT HERLREIDEE LETPTGRPLP HEIPKIVIEE 360
  361 YLLYSPDCGK VLSLKPGSVF SGKKTEVTRA QMRNVLTGIL VLVGFQLFLV LRQIKNAQTP 420
  421 GQLSLISSKT LFLLGYQDSL VAIMTLLLST ITVELYLILA CIATIAFISC GVFEMRFMVS 480
  481 VLTTQANERG TSWWEILRGA NAEREQQVPE EGPILPIAND PPPQETVPNQ AWQETSYSNS 540
  541 IFASGFSITI VSMFIIFSSL QWRIQYRKAF EYVSLVFVNS FWVPQFFRNT LKNRRKSFTW 600
  601 EFAFGTSVIR VLPIYYFALV KGNPLRHRYD PILCIVVSVW LGVQLLLLVL QNQFGPRFWI 660
  661 NEKWLPKAYE YQRLLSMKDL QEEGFSSELL ETLKTTMSQS EDQDIVTSQC MCPICMTDVD 720
  721 LPISVKEDNL EEAKRKVNIK GFMITPCHHI FHTECLENWM KYKLQCPVCR KSLPPI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle