YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.34, orf19.7705
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	44	0.95
Transmembrane Helix	45	63	0.81
Non-Cytoplasmic	64	90	0.79
Transmembrane Helix	91	110	0.78
Cytoplasmic	111	116	0.68
Transmembrane Helix	117	138	0.89
Non-Cytoplasmic	139	183	0.56
Transmembrane Helix	184	207	0.89
Cytoplasmic	208	216	0.53
Transmembrane Helix	217	238	0.90
Non-Cytoplasmic	239	267	0.60
Transmembrane Helix	268	297	0.65
Cytoplasmic	298	310	0.63
Transmembrane Helix	311	330	0.94
Non-Cytoplasmic	331	336	0.62
Transmembrane Helix	337	357	0.91
Cytoplasmic	358	362	0.62
Transmembrane Helix	363	383	0.85
Non-Cytoplasmic	384	399	0.64
Transmembrane Helix	400	421	0.74
Cytoplasmic	422	431	0.64
Transmembrane Helix	432	452	0.96
Non-Cytoplasmic	453	519	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLVKSSEV IETTEVPPHN NNNNKRHFKY DSEQRKQRLA GGVKLKDALM ILCAGFALIS  60
   61 DGYQNNVMSM MNKVFALEYP KEYTASLSTQ VSNASLVGTI FGQVIIGLTA DYIGRKWSIV 120
  121 TATCFLIFGT MMCAASHGKT VNGMFWMLTI FRGVTGFGIG AEYPSSSVTA SEAANESVKR 180
  181 RGGAFILATN LPLSFGGPFA LCIFLIVRRI CGNHLDAIWR TMFAIGCFWP LSVFYFRLKM 240
  241 VTSELYTKSA IKQRAPYWLA LKYYWPRLIG TCVAWFLYDF VTFPNGIFSA GIISNVIPKS 300
  301 EKNNLEKIAE WNLLLGAIAL PGVFVGAYVV DILGRKYTMM IGFCGYIVFG LIVGCGYHQI 360
  361 KPITGLFIVF YGLMMSCGNF GPGNNMGLTS SESFATPIRG TAYGISAAIG KVGAVVGTKT 420
  421 FSPIQKNLGD KWTFIIAAIC GLAGVLVTFI FIPHLKDEDL LEEDVKFKNY LIDNGWKGKF 480
  481 GIQEYDEEED LEGSSEDSSD GEIVKNNTKN DVEKVDALK