YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.24, orf19.7695
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEILNYLSS WTPTSTPTST TLSSIATSHV SKLSQTVASV ISQATTETDW YNLRSLSQAY  60
   61 RGAQASLTII SAEKVLATAT DSQVQSRATQ AIFEATLNLK DLSMEQNIYG YELNRAANII 120
  121 YLVVYAIIFG YTLLMCIKSK YWWYNVTFVC GYGLEFVGFL GRVLSFNDTS NMSHYIMQSV 180
  181 ALTIAPAFIM AGVYFLFGQL VVIHGRQYSV LKPMWYSYFF ITADVVSLLI QAAGGGIASV 240
  241 ASSNHKDSSV GTNIMIAGIA AQVVAMTIFL VFWFEFLNRL YFKNSRSDLI VDCPYGRRSI 300
  301 SNYFKLLLNV KSVRGHRHTH LEKYYNEKFA SIRQIPLFDY MVLAMTIAVI VVYIRCVYRV 360
  361 AELAEGWGGY LFTHEPYLMI LDAAMIAIAG LIFIPFHPVW VFGKNNIVKL ATIKKNLDEN 420
  421 EKNQDVEYND DVESQERSSS VVANDIHCLN SKL

Type	Start	End	Confidence
Non-Cytoplasmic	1	115	0.62
Transmembrane Helix	116	135	0.80
Cytoplasmic	136	141	0.69
Transmembrane Helix	142	164	0.76
Non-Cytoplasmic	165	179	0.82
Transmembrane Helix	180	203	0.86
Cytoplasmic	204	214	0.89
Transmembrane Helix	215	238	0.87
Non-Cytoplasmic	239	253	0.85
Transmembrane Helix	254	277	0.89
Cytoplasmic	278	336	0.96
Transmembrane Helix	337	357	0.94
Non-Cytoplasmic	358	377	0.88
Transmembrane Helix	378	401	0.90
Cytoplasmic	402	453	0.96