YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.1427, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	49	0.95
Transmembrane Helix	50	67	0.72
Non-Cytoplasmic	68	93	0.71
Transmembrane Helix	94	116	0.66
Cytoplasmic	117	124	0.76
Transmembrane Helix	125	147	0.86
Non-Cytoplasmic	148	153	0.66
Transmembrane Helix	154	174	0.92
Cytoplasmic	175	183	0.87
Transmembrane Helix	184	207	0.90
Non-Cytoplasmic	208	214	0.87
Transmembrane Helix	215	237	0.92
Cytoplasmic	238	285	0.96
Transmembrane Helix	286	311	0.85
Non-Cytoplasmic	312	322	0.79
Transmembrane Helix	323	341	0.95
Cytoplasmic	342	349	0.72
Transmembrane Helix	350	370	0.95
Non-Cytoplasmic	371	377	0.82
Transmembrane Helix	378	399	0.92
Cytoplasmic	400	408	0.88
Transmembrane Helix	409	430	0.92
Non-Cytoplasmic	431	440	0.81
Transmembrane Helix	441	461	0.93
Cytoplasmic	462	498	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEKLSTAVT QDESVTDTSE FDNVLYFIKE NEQIIDPDST IDGAKIVRKL DLIILPLLCC  60
   61 IYFLQFLDKS LLNYAAAMGI KKVLDNHGVG NNQFANLSTM FYASYIFGEP IMSYILQRYP 120
  121 LGKSLGVCIV LWGVVVTCHS ACSSYASLMI VRTLLGIFES SSAVGLITIS GMYYNKRQQV 180
  181 ARMGIWSVMA GTATIFGGLL SFAFQHIHVQ KFKSWQILFL VIGLITIAFG FFVMVYLPDN 240
  241 IDTVWFLNKQ EKLYILNHTV RPNQTGTKSS KFKWKHIKEL LILDKFTWLY FLLTICSQIV 300
  301 TGAIGTFSVT ITLSFGFDSY QSALLQLPIG ALIIIIILTA TQLVSQFGHI TYIIISMFIP 360
  361 TIVGAIVLII SPNKIGNIMA LYLLYSGSSV ITLIYSWTSV NTAGTSKKIF RSGMIMIAFS 420
  421 IACIIGPQLF QNYSAPKYHP AKIVILITQC MCIPITWLIG WMCQQENSKR DQIKDQMPEN 480
  481 FEFFDLTDLE NTQFRYSY