YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.1424, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	43	0.90
Non-Cytoplasmic	44	61	0.89
Transmembrane Helix	62	83	0.90
Cytoplasmic	84	90	0.85
Transmembrane Helix	91	110	0.91
Non-Cytoplasmic	111	116	0.88
Transmembrane Helix	117	139	0.93
Cytoplasmic	140	152	0.91
Transmembrane Helix	153	176	0.87
Non-Cytoplasmic	177	182	0.88
Transmembrane Helix	183	205	0.92
Cytoplasmic	206	342	0.99
Transmembrane Helix	343	363	0.91
Non-Cytoplasmic	364	405	0.93
Transmembrane Helix	406	426	0.87
Cytoplasmic	427	440	0.72
Transmembrane Helix	441	459	0.96
Non-Cytoplasmic	460	466	0.85
Transmembrane Helix	467	489	0.91
Cytoplasmic	490	498	0.83
Transmembrane Helix	499	517	0.95
Non-Cytoplasmic	518	545	0.93
Transmembrane Helix	546	567	0.93
Cytoplasmic	568	571	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTLPFINNG NKSNTGSSHL PGRLTALIVS ILVALASGTP YLYGVYSPQF VKQVGLTTSD  60
   61 SATISLATNL GSGVGGLPGG LIIDHFGPQK SILLGSVCIF IGYFAMHKIY EAKYDNLLII 120
  121 CLAMVLAGFG SITSYFATLK ASQSNFPKHR GAAGAFPVSA YGFAATIFSI ISATYFKGNS 180
  181 GGLLEFLSIF CGSMTFLGSF FIHIYLDHHD DREMDPEMSS PEFVSSPSPN YYNIESASSR 240
  241 SPRIEEEISL LSEGNSVIEP PATTMSRQDS LQGSISFWGI GQRTPRESIS LQESEANNIV 300
  301 ESLRNENVPK QQQEEQSKDS NKSWLNLISV PEFLQKENGR IFAIHYYIVS LASGIGQMYI 360
  361 YSVGFIVTAQ YYYGKNKIEN LTTENHRFSR NDIHHDPNVD DTVQTLQALQ VSVISIASFS 420
  421 GRLFSGFLSD YIYKKWHIQR LWIVPVTLVF LALGQYLTIQ NVNDLHLVTL ASALIGGSYG 480
  481 LIFGTYPAVI ADRFGTRSFS TSWGLVCTGP LITLWILNKS FGKLYDANSD SDTGICYLGN 540
  541 GCYQGAFELS LVLCGMTFVV TLLLIYIQRK Q