YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9963984
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	160	0.98
Transmembrane Helix	161	182	0.87
Cytoplasmic	183	230	0.79
Transmembrane Helix	231	250	0.80
Non-Cytoplasmic	251	275	0.76
Transmembrane Helix	276	294	0.76
Cytoplasmic	295	310	0.56
Transmembrane Helix	311	329	0.88
Non-Cytoplasmic	330	345	0.66
Transmembrane Helix	346	367	0.90
Cytoplasmic	368	373	0.67
Transmembrane Helix	374	394	0.92
Non-Cytoplasmic	395	400	0.63
Transmembrane Helix	401	418	0.60
Cytoplasmic	419	706	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAINSLLFA AITLVSSAQA TDTLTIYHNN KFAVQACKGL IGKTAVLFNE TTDKAGFCNV  60
   61 KNQQALGTMA ECIELMPHKD SRKEFLKTCK KFNLTEEDYL AAWKNATEFG YVNVTADPDF 120
  121 KKKKLYYKPV LLKKKKVEAA WDAVATRWYN YNYAQWYGIA LFSYWFAVMF VAGICNLTYF 180
  181 LFPGFVKSLK GGISNAFRKY ITLPALFKKT HAHHKSIFGV FHAILPTRLE SILVVAWFIM 240
  241 ALIMNLTNYV HVKPNYIWPQ KSNELGRKIA DRTGQISMWL MPPLVLFAGR NNFMQWVSGW 300
  301 PYARFVYIHK WISRVVFMMS IAHGVGMTYN GKGIGKYYTR NAKPYVRWGY VALVAMSIMV 360
  361 FQGFSYFRRT NYEVFVGVHI ILAVFAIAGT WIHTTEQGYQ MWMYGAVAVW VFDRVVRIAR 420
  421 LATFGLRSAT VQLIANETVK VTVSRPGWWK PFPGCHAFIH FMRPTCFWQS HPFTIVDSVT 480
  481 ESNTITFYIK VKGGMTHGLY QYLAQQPAQT AQIKVSIEGP YGNRMAIDRF ENDVFIAGGN 540
  541 GIPGIYYEAT DIAKRLGEKR NVKLYWVVRH YRSLEWFYQE LLKLKDLPIS TTVYVTQPNV 600
  601 GLADPITTDL TDDEEQQEHE QEKKSDTEES NDYVAQVKKN LSFIQFIETK PDFYQIVGEE 660
  661 IKQSTGPIAF ASCAHGNMVD DVRKSVVDNL SNSNHRVELF EQMQNW