YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.6592
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	83	0.90
Transmembrane Helix	84	102	0.79
Non-Cytoplasmic	103	142	0.90
Transmembrane Helix	143	162	0.92
Cytoplasmic	163	169	0.84
Transmembrane Helix	170	194	0.82
Non-Cytoplasmic	195	199	0.57
Transmembrane Helix	200	218	0.81
Cytoplasmic	219	226	0.64
Transmembrane Helix	227	252	0.78
Non-Cytoplasmic	253	283	0.88
Transmembrane Helix	284	303	0.91
Cytoplasmic	304	399	0.97
Transmembrane Helix	400	422	0.87
Non-Cytoplasmic	423	446	0.88
Transmembrane Helix	447	465	0.96
Cytoplasmic	466	472	0.84
Transmembrane Helix	473	492	0.93
Non-Cytoplasmic	493	498	0.79
Transmembrane Helix	499	520	0.91
Cytoplasmic	521	530	0.84
Transmembrane Helix	531	552	0.90
Non-Cytoplasmic	553	559	0.73
Transmembrane Helix	560	581	0.91
Cytoplasmic	582	589	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIQSSISSS NQSITPKTKL TNLELELELE LEEEEGEEQP QEVQEINSTS FSSSITFGLY  60
   61 DESDGDKAYL AKSKLIAESI QSIGFGKYQI GLFFVAGFGW LSDNAWPVAT SLILPRLNEI 120
  121 NGVHPPPPSS SSSSSSSPNK GPYLMLAQNL GLLLGAAFWS ISSDIIGRKW AFNLTFLITG 180
  181 IWAIIGGSSP NFIALCCFEA FWSFGVGGNL SVDSAIFLEA LPSSYQWLLT VMSAWWAIGQ 240
  241 IVVNLISWGL IANFSCPTID NDVGSGSGSG NIICYKEDNK GWRYFLFTMG GLTLLMFFAR 300
  301 FAFQIFESPR YYLARGDSIK TIETLEKIAK INGKTCPITI KDLQDIDELY DESELEKETE 360
  361 TETDTTTTTT KKNNRLIKEK LKKYNLSHVR QCFTTSKKMT LSIILVVWLW GVIGLAFPLY 420
  421 NAFIPSYLES RGDANKPLTV HETYRNTLII SILGIPGSLI GGILVELKIG RKGTLFLSLI 480
  481 LTGIFLFGST TAKTSKANLA WNCMFSFMST IMYGVLYAYT PEVFYSQIRG TAIGLAASFN 540
  541 RIMGVFAPII AIYADLTTSA PIFVSGALFI FAGILSLCCP YEPRGKPSY