YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.9413, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	173	0.94
Transmembrane Helix	174	198	0.76
Non-Cytoplasmic	199	229	0.56
Transmembrane Helix	230	254	0.73
Cytoplasmic	255	265	0.68
Transmembrane Helix	266	287	0.88
Non-Cytoplasmic	288	297	0.63
Transmembrane Helix	298	321	0.88
Cytoplasmic	322	373	0.75
Transmembrane Helix	374	392	0.76
Non-Cytoplasmic	393	421	0.73
Transmembrane Helix	422	441	0.91
Cytoplasmic	442	450	0.61
Transmembrane Helix	451	470	0.94
Non-Cytoplasmic	471	475	0.78
Transmembrane Helix	476	497	0.79
Cytoplasmic	498	508	0.89
Transmembrane Helix	509	530	0.88
Non-Cytoplasmic	531	540	0.82
Transmembrane Helix	541	563	0.93
Cytoplasmic	564	604	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFFSEPISR LKWGIFPTRR IVDEDEHGNF IDPDTIMANS SLAPSSDNDD DVASISKTNL  60
   61 EKLKTKEEIK FISSTPKATP VVLEYRDEKN RPWWKFFDEY EYRVTSNVKS KRKWYKWFHE 120
  121 DDTPEERRVI MKIDILLTLY SLAAYFVKYL DQSNLTNAYV GGLKEGLGMK GNDFVNTGVM 180
  181 FSVGNIIFQI PFMYIVYALP LNYVLPALEL GWSVLTVCLY RSGNVHGLKA LRFFIGAFEA 240
  241 PAYLAYHALF ASWFKASTGE IARRAGFYYL GQYLGILTSG LLSGTIVRHL DGAAGHAAWQ 300
  301 WIFIIDGIIS VVIAIFGFYM IPGTPQDCYS IFLSDEEIRI ARRRMKADQK DSKPRENAVK 360
  361 YFFNKDIWKK IFTSWHFYVL TLWTIFCWNN SNASSGAYAL WLKSLTDSDG NQRFTGGKLQ 420
  421 DYTALTPGLG LIWLILASTF ADLFRSRWGA ILFTQVFNIL GNVLLAVWHI PERAKWFAWC 480
  481 MQYFGWAMAP VLYSWQGDIC RRDIRERQIV LVSMNMLAQQ STAWIAVLVW KTVEAPRFLK 540
  541 GYTFTACSAF ALSVWTMVVL WLYKREEREN ARANGIILYD SSKEDLEQVQ VQAEANSINS 600
  601 KSEK