YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.7790, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSADHTRDPC PIVILNDFGG AFAMGVIGGC VWHGIKGFRN SPYGERSYGA LSAIKARAPV  60
   61 VGGNFGVWGG LFSTFDCTVK AVRKREDAWN AVIAGFFTGG ALAIRGGWKH TRNSAITCAC 120
  121 LLGVFEGVGM MMQRLQAQPT MAPVYPEEPT ALAA

Type	Start	End	Confidence
Cytoplasmic	1	12	0.75
Transmembrane Helix	13	35	0.89
Non-Cytoplasmic	36	55	0.72
Transmembrane Helix	56	75	0.79
Cytoplasmic	76	87	0.66
Transmembrane Helix	88	107	0.87
Non-Cytoplasmic	108	113	0.61
Transmembrane Helix	114	132	0.86
Cytoplasmic	133	154	0.71