YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.2633
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	65	0.95
Transmembrane Helix	66	87	0.85
Non-Cytoplasmic	88	110	0.84
Transmembrane Helix	111	134	0.86
Cytoplasmic	135	141	0.78
Transmembrane Helix	142	163	0.90
Non-Cytoplasmic	164	169	0.75
Transmembrane Helix	170	192	0.81
Cytoplasmic	193	209	0.73
Transmembrane Helix	210	226	0.76
Non-Cytoplasmic	227	236	0.75
Transmembrane Helix	237	257	0.90
Cytoplasmic	258	330	0.96
Transmembrane Helix	331	351	0.89
Non-Cytoplasmic	352	368	0.86
Transmembrane Helix	369	390	0.93
Cytoplasmic	391	398	0.87
Transmembrane Helix	399	418	0.91
Non-Cytoplasmic	419	437	0.86
Transmembrane Helix	438	460	0.90
Cytoplasmic	461	470	0.80
Transmembrane Helix	471	491	0.89
Non-Cytoplasmic	492	499	0.83
Transmembrane Helix	500	521	0.92
Cytoplasmic	522	592	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDEKTTATY ESHTKQDSMS STSSQSIEQI SSPTKSEPKK KSWFKMKNLF EKVEDRPTPP  60
   61 QVYNYRIYMT AIMASAAAII IGYDGGFIGG TVALDSFKNE FGLDKSAHSS FIISNVISVF 120
  121 HAGCFFGALF SYPFSFYLGR RIPLIFAAFL ITAGSGIMLA ANSSVGLGPI YAGRVMAGVA 180
  181 VGFSTNLTVV YISEIAPPAI RGQLTSSYEI GWRVGDLVGF WINYGVDSHI PEGKRQWYIP 240
  241 FAIQLIPSGL FLLGSIFMKE SPRWLMQVGR YDEAIKNLTW FRQLPEDDEY IVYEVNQVKE 300
  301 SIEEQKQKIG LGIMDPFYEV FFNNKLVLRR LLITMTIYVV CNFLGIQSIN YYSPILFQGL 360
  361 GVKGTNASLF STGMFGVVKF ICTFIYILFI VDTVGRRKAF MASSTVCSLC FWYIGAYLKL 420
  421 NDPTKPGVSA GPGGKAAIAM MYIWIASFIL AWSGGPFVVG SEVFDQNIRS FVQAINAAMS 480
  481 WVPIFIMSRF TTNMIRAMDY GIYFFFAALA VATIPFLFFC LPETKGIALE DMDRLFSPEL 540
  541 PAWRAHDILM KRVQHETEEV FHENHKHGLF EAVDNKPVSE NVEDILVNKE EK