YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NOX3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTCWILNES VSFVVALLWL AINIYLFIDT FCWYAEEESF FYTRVILGSA LAWARASAVC  60
   61 LNFNCMLILL PVSRNFVSLV RGTSVCCRGP WRRQLDKNLK FHKLVAYGIA VNSVIHIVAH 120
  121 LFNLERYHLG QAKDAEGLLA ALSKLGNAPN ESYLNPVRTL YTGTTTQLLM TVSGITGLVI 180
  181 SLALILIMTS STEFIRQSSY ELFWYTHHIF IFLFISLAIH GGGRIIRGQT PESLRLHNVT 240
  241 FCRDHFDEWQ EAASCPVPQF SGKEPSAWKW TLGPVVLYAC EIIIRFWRSH QEVVITKVVS 300
  301 HPSAVLELHM KKRDFKMAPG QYIFIQCPSI SPLEWHPFTL TSAPQEDFFS VHIRASGDWT 360
  361 EALLKAFGAE GQAPSELCSM PRLAVDGPFG GSLADVFHYP VSVCIATGIG VTPFASLLKS 420
  421 VWYKCCESQS LPGLSKVYFY WICRDAAAFE WFADLLLSLE TQMSEQGKAH LLSYHIYLTG 480
  481 WDEYQAIHIA LHWDESLDVI TGLKQKTFYG RPNWNEEFKQ IAYNHPSSSI GVFFCGPKAM 540
  541 SKTLQKMCRL YSSSDPRGVH FYYNKENF

Type	Start	End	Confidence
Cytoplasmic	1	10	0.80
Transmembrane Helix	11	33	0.85
Non-Cytoplasmic	34	50	0.77
Transmembrane Helix	51	72	0.85
Cytoplasmic	73	100	0.89
Transmembrane Helix	101	120	0.89
Non-Cytoplasmic	121	167	0.88
Transmembrane Helix	168	189	0.91
Cytoplasmic	190	203	0.79
Transmembrane Helix	204	223	0.95
Non-Cytoplasmic	224	568	0.84