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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|33589619
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARNVQQRQQ HPCTTTEEPK HQRARGTAGH QESATGECQQ FWSKQRPPFD QQQQQEDQDP  60
   61 EQDPQQHPST PQESVHHHRS PRQHELLHHQ RKVPPTLPAR GRHLISEGAR RREVRGCGAG 120
  121 GGGLLCCSLD ALSRPAKLLQ FGVLLLILLL ATHGDLAQAE GNVGCQFVRT LCIPHSEVCY 180
  181 DDNIFGKCIP TTGVDVEDIE KTPLTEDQSR VLATMLEELQ GAGLGWDHPY VQCRIQGSLF 240
  241 SLQRQQQLPP NLCANLAPTP PEFGDPASAL AYVRFTPPEP EAELDYYEQP AGPAQFYPAL 300
  301 RKKQVRESDA DDMYLNRMLQ DRRRLRHDPS ELEHFGKMDG HGQSTQLDAP SIMDAFLDTE 360
  361 RQRIEREQQL AAAEQDADRR AEQNRLELYQ ILAASEPDPQ PYQRKPAAQP NAMDQLEAIV 420
  421 EQQQQRELKE QQEQAKAPVY VPPEEVNESS ELYFPDNFAP FKRARGRSRG GLAEEVEDEQ 480
  481 PKRSFFRELA GEQGLVQEPP LRFRHVETEV DATPELVKRR PASFKQLDPY DVSLQQQEMA 540
  541 FESGLLRNSL TPLEEEAMLA SNSFPRQAKS QRVYTEGGLL LMPQDEQDTD GMQADEPENV 600
  601 KQSLLANMLG FARHERLDVK KPGPLLGPPS LGSAELSNQL ETEKAHKQKG HGNKEVLPAH 660
  661 IKGNDEDDAH KKKKVMKQQH SAEDHAPHTV DTEYVHVFVK NPIDSWNDGQ RIMKELEQIL 720
  721 HMQGYFSYLT VQQHEVSFRV NSNNPERKTA GDVARTINEN RGVKNNIQRR VGFYVLHAGV 780
  781 GDVIKDLQDP SVSSSRIELA EQGPDVTHIM AYMFAGAGAA AVIVIFVTLI LIKRHDRKRD 840
  841 KLGGLQSGIA GAETCSKDYQ ELCRARMAGK AGGGGNSTGG AAGGGSNEPA PSGRITSLSK 900
  901 ENEGRPPSSR SSTSSWSEEP ALTNMDISTG HMVLSYMEDH LRNKGRLQRE WEALCRYEAE 960
  961 PSAREAASQP QCAGLNRPGA PLPYDHSRVV LNHLANAEGL DYVNASTITD HDPRAPAYVA1020
 1021 AQGPLPSTLA HFWQMIWEQG AVVIVALCRL QENGEVACAR YWPEEGAEVY HIYEVHLVSE1080
 1081 HIWCDDYLVR SFYLKNLRTS ETRTVTQFHF LSWPHMGVPA QAKALLDFRR KVNKSYRGRR1140
 1141 SCPIVVHGSA GAGRTGVYIL LDLVLERMNK GAREIDIAAT LEHLRDQRAG VVATRQQFEF1200
 1201 VLMAVAEEVH AILKALPANT SGEKRELDKD PVVGGGSSST TTKEPLKEDK AQEAAEEEAP1260
 1261 TSSSKAAAAA KKEKEGITGG GWSFACR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle