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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|33589524
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.54
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNTKLTSVA ATSTSGYTVV FVGTSDGFLK KVVIESSSIA NEYASFAVDL GSEINRDMQF  60
   61 DNQNLYIYVM SKTKVSKVKV FDCSDYKTCG DCLGARDPYC GWCSLENKCS PRSNCQDDAN 120
  121 DPLYWVSYKT GKCTTITSVV PHQLQRTTAR TLELIIDHLP QLKENLICAF TTEDKALFTN 180
  181 ATKKRNGVNC TTPRTDMLPQ IEQGKHHFTA KLSVRTRNGP DLVSTDFTFF DCSTHSSCTR 240
  241 CVSSEFPCDW CVEAHRCTHD TAENCRNDIL VTGVSRIGPS YRSGPGFCPT INATGDGSEV 300
  301 LVAGGTSKSI KVKVHIIGQF IVQTRFVCQF NIEGRVTSLN AQLLGDTIYC DSMEFQYTSR 360
  361 SPNLTATFAV IWGGSKPLDN PHNIHVVIYR CREMADSCGI CLALSEKYNC GWCSSTNTCE 420
  421 VEEQCNKNKE GKTDWLNRSE ICPNPEIHTF QPKTGPWEGG TNITIRGINL GKNYNDIYSG 480
  481 VRIAGINCMP FPQFYIDTKQ IVCTVDSPGE QMYRNGKIVV QIGDYRGESK EDYEFVDPKI 540
  541 LDFNPKFGPT SGGTEIHITG KHLNAGSRIQ ASINDHLPCK ILSTDSSQAI CRTSASPGII 600
  601 EGRLKMSFDN GPREFNDYNF KYVLDPTVEH VSSGPSGQIK VPKGIPAGGI RISVTGTQFT 660
  661 SIQNPNIYVV YNGEMYASPC RVQSDTEMEC ASPVVDVDSH VIEAERPILL EYGFLMDNVL 720
  721 RVQNLSKVHN NHFELYPNPE YFIFEERVKY FKSEYLTING RNLDRACKES DVEVKIGNGF 780
  781 CNITSLSRQQ LTCRPPSEAT ATKSMNGPEV IVRIGTSLEY RIGILSYESS NIILDWGENV 840
  841 IFAVIATIVI LLLIFVALLV AYKKKSSESS RVLRNMQEQM DILELRVAAE CKEAFAELQT 900
  901 EMTDLTGDLT SGGIPFLDYR SYAMRIKTTL YYNGNVLSFF GKKKAYVFLA N

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle