YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54145443
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCGGRGGIWL ALAAALLHVS LQGEFQRRLY KELVKNYNPL ERPVANDSQP LTVYFSLSLL  60
   61 QIMDVDEKNQ VLTTNIWLQM SWTDHYLQWN MSEYPGVKNV RFPDGQIWKP DILLYNSGCQ 120
  121 LHFDQDLQNM LLREACAQAG EDLRVSADER FDATFHTNVL VNASGHCQYL PPGIFKSSCY 180
  181 IDVRWFPFDV QQCKLKFGSW SYGGWSLDLQ MQEADISSYI PNGEWDLMGI PGKRNEKFYE 240
  241 CCKEPYPDVT YTVTMRRRTL YYGLNLLIPC VLISALALLV FLLPADSGEK ISLGITVLLS 300
  301 LTVFMLLVAE IMPATSDSVP LIAQYFASTM IIVGLSVVVT VIVLRYHHHD PDGGKMPKWT 360
  361 RIILLNWCAW FLRMKRPGED KVRPACQHKP RRCSLASVEL SAGAGPPTSN GNLLYIGFRG 420
  421 LEGMHCAPTP DSGVVCGRLA CSPTHDEHLM HGAHPSDGDP DLAKILEEVR YIANRFRCQD 480
  481 ESEVICSEWK FAACVVDRLC LMAFSVFTII CTIGILMSAP NFVEAVSKDF A

Type	Start	End	Confidence
Signal Peptide	1	23	0.97
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	260	0.99
Transmembrane Helix	261	283	0.94
Cytoplasmic	284	290	0.91
Transmembrane Helix	291	314	0.88
Non-Cytoplasmic	315	321	0.90
Transmembrane Helix	322	346	0.88
Cytoplasmic	347	498	0.98
Transmembrane Helix	499	519	0.92
Non-Cytoplasmic	520	531	0.88