YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RHBG_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.94
Transmembrane Helix	9	30	0.91
Non-Cytoplasmic	31	60	0.96
Transmembrane Helix	61	79	0.90
Cytoplasmic	80	87	0.69
Transmembrane Helix	88	109	0.88
Non-Cytoplasmic	110	117	0.81
Transmembrane Helix	118	141	0.86
Cytoplasmic	142	148	0.81
Transmembrane Helix	149	171	0.87
Non-Cytoplasmic	172	178	0.76
Transmembrane Helix	179	198	0.91
Cytoplasmic	199	211	0.91
Transmembrane Helix	212	231	0.92
Non-Cytoplasmic	232	248	0.88
Transmembrane Helix	249	269	0.85
Cytoplasmic	270	277	0.78
Transmembrane Helix	278	295	0.87
Non-Cytoplasmic	296	301	0.64
Transmembrane Helix	302	323	0.89
Cytoplasmic	324	337	0.94
Transmembrane Helix	338	360	0.88
Non-Cytoplasmic	361	389	0.94
Transmembrane Helix	390	413	0.90
Cytoplasmic	414	459	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAESTNLRLR LPLICIILEV ILIILFGVLV EYNDDTDAKK WNKNNSTDPA TNEFYYRYPS  60
   61 FQDVHVMIFV GFGFLMTFLQ RYGFSSMGFN FLIAAFSLQW ATLMQGFFHG MHHGKIHVGV 120
  121 TSMINADFCT GAVLISFGAV LGKTSPVQLL VMAILEVTLF AVNEYILLSI LGANDAGGSM 180
  181 TIHTFGAYFG LMVTRILHRP NLDKSKHKNS SVYHSDLFAM IGTIFLWMFW PSFNSAITQY 240
  241 GDPQHRTAAN TYYSLAACTL ATFGFSSLVN PEGKLDMVHI QNAALAGGVA VGTAGEMMLT 300
  301 PFGSMIVGFL AGTISVLGYK YLTPFMESKL KIQDTCGIHN LHGMPGILGA IVGAVTAALA 360
  361 SRDVYGNGLD KVFLEAADNS QWSAQTKGGF QAISLAVTLG IALIGGLITG FLLKLPIYGT 420
  421 PPDTQCFEDA VYWEVPGEEE DHHELNEVST QNEVEKLNS