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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|42538965
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLMLPLSSA DGSGKYLRSL PDSVSFQNDR LYATQPQRHW PVKREAIVEG DVILGGLMMV  60
   61 HSREDSITCG PIMPQGGIQA LEAMLFTIDR INREQLLPNI TLGAHILDDC DKDSYGLEMA 120
  121 VDFIKGSISN IDDAEYHCNK TQVRKVISGV VGAASSVTSI QVANLLRLFR IPQVSYFSTS 180
  181 PELSNKQRFE YFSRTIPSDH YQVKAMVEIV KRMGWSYVSI IYEESNYGIK AFEELEELLA 240
  241 RHNICIAIKE KLVKDSGVAE DIAYDNIVQK LLTKPRARGA IIFGSDQEVR QVMRAVRRAN 300
  301 ATGSFSWIGS DGWSARNLVS DDYEPEVEGT LSVQPQANPV RGFEEYFLSL TVENNQRNPW 360
  361 FVEFWEDHFQ CRYPGSTSTP YNNYTKQCTT KERLSRQNTD FEDQLQFVSD AVMAFAYALR 420
  421 DMHRDLCGGG PSLCEAMKPT KGADLLKYLR KVEFEGLSGD EFRFDGNGDG PARYNIIHFK 480
  481 QSQAGQYHWV KVGEYTEGEL RLNMTEVKFK RLSPKPPESV CSLPCLVGQA KKYVEGESCC 540
  541 WHCFNCTTYQ IRHPDDETHC KLCKLGTLPD AHKQYCRPIP EIYLRPESAW AIGAMAFSAT 600
  601 GILVTLFVMG VFVRHNDTPI VRASGRELSY ILLAGIFMCY GVTFALVLKP TNIVCAIQRF 660
  661 GVGFCFTVVY AALLTKTNRI ARIFKAGKQS AKRPSFISPK SQLVICACLV SVQILINGVW 720
  721 MVIAPSHAMH HYPTREDNLL VCDSYIDASY MIAFSYPIFL IVICTVYAVL TRKIPEAFNE 780
  781 SKHIGFTMYT TCVIWLAFVP LYFGTANHVP LRITSMSVTI SLSASVTIAC LFSPKLYIIL 840
  841 IRPERNVRQS MMPPRYGNMH RTAGTGPSSM MAAAVVTAAT CAQEEKIQKH ITPTNTENSL 900
  901 KTKKLCEMAT QTISSIITSL DINAYNQIPY ADQYVPNNAT TATTTPTDKG SSNGNSNSNS 960
  961 NTNGSSNSNS NSNSNGDGDV ATEQVVANNN KINQRQHGQP AVAFAITSTN NHISGPAATI1020
 1021 TTTAATGETT TEALVATITT PLATGDGSET MSVAPNNGHG NGSQRPPVLQ TNL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle