YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44985392
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLRRMTPGA GYARRCARSA VSGGRPRGLN TQPTGEQAAS QGVRTRQRGQ MQSVRQTVLF  60
   61 ESEEAWRAGA EQKTTAITVH ARGGEVVQTR RTWAAAGGPR VRVTWSGGRT VSEVSPQLAA 120
  121 GLSVYVEGGA HVSRDFVQAR GQAVFHSAQL ELDAVRAWWP RELAVQPEAL RWAECAYDIE 180
  181 LGRQVRVDEY CALRAGETVA LTAAAGGTDE AKVETGVFYP EISDGADVSL SGFRCTWLRD 240
  241 GSGRTDTCQK TLLMYKPAHV HMPEPAVGIE LVQPVTLHPV IEVDLSSVSA SGPACAHHVF 300
  301 LQLPAQLFVD KFQQPPELLF GEDDLELPEY KVEAWGSEVI YALEPGRVNR VQLHSRYARP 360
  361 GPGRRYEVVP LRPYVFEACD TGSADIAENP FYSKGMGFEA YFTADTVFKH RNSTRLNIPV 420
  421 PRGNSNDFPS IQYVTVLSIL FSVLYISYCL FRRPVAASAR ASG

Type	Start	End	Confidence
Non-Cytoplasmic	1	430	0.99
Transmembrane Helix	431	451	0.89
Cytoplasmic	452	463	0.89