YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44986374
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIFIPHSKL RNLKEYKYRG EDRSIVSKYV LKPFWAKFVN VFPLWMAPNA VTLSGFGFIV  60
   61 ANLCTVLYYD PKLEGNNPRW TYFTYAIGLF LYQTFDACDG AHARRTSQSS PLGELFDHCI 120
  121 DALNTSLGVI VFCSVIGSGY SLLSMLIQFA LLCNFYLSTW EHYHTHQLFL SEFSGPVEGI 180
  181 LLTCISFMFT GIWGPEAVWH VPIKEVTIGK WTLMVESQHL VFVFCGIGLL YNLAASRKNV 240
  241 VDYYTEKHGA SKVTDKQIRS AMYGVSPFFV YFAFLFAVGF FEPAFLSLPF MLEAGLTIAF 300
  301 VVGRIIVAHL TLQDYPSCNV PMYIPLAQIL LRVLLVNGLG YDKGSAIFAL TWFGCGLTLG 360
  361 IHAMFLTEVI CEFTQFLDIY ALTIKHPKIA

Type	Start	End	Confidence
Cytoplasmic	1	40	0.65
Transmembrane Helix	41	69	0.72
Non-Cytoplasmic	70	126	0.51
Transmembrane Helix	127	158	0.72
Cytoplasmic	159	172	0.57
Transmembrane Helix	173	193	0.85
Non-Cytoplasmic	194	216	0.62
Transmembrane Helix	217	235	0.82
Cytoplasmic	236	260	0.71
Transmembrane Helix	261	281	0.88
Non-Cytoplasmic	282	287	0.56
Transmembrane Helix	288	308	0.82
Cytoplasmic	309	319	0.56
Transmembrane Helix	320	339	0.71
Non-Cytoplasmic	340	345	0.55
Transmembrane Helix	346	366	0.89
Cytoplasmic	367	390	0.63