YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RFT1_ASHGO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.81
Transmembrane Helix	16	37	0.79
Non-Cytoplasmic	38	44	0.67
Transmembrane Helix	45	63	0.88
Cytoplasmic	64	93	0.91
Transmembrane Helix	94	114	0.93
Non-Cytoplasmic	115	129	0.76
Transmembrane Helix	130	152	0.82
Cytoplasmic	153	164	0.87
Transmembrane Helix	165	184	0.90
Non-Cytoplasmic	185	203	0.90
Transmembrane Helix	204	226	0.80
Cytoplasmic	227	347	0.89
Transmembrane Helix	348	368	0.92
Non-Cytoplasmic	369	386	0.82
Transmembrane Helix	387	408	0.89
Cytoplasmic	409	417	0.80
Transmembrane Helix	418	439	0.91
Non-Cytoplasmic	440	445	0.79
Transmembrane Helix	446	465	0.87
Cytoplasmic	466	485	0.86
Transmembrane Helix	486	506	0.89
Non-Cytoplasmic	507	513	0.74
Transmembrane Helix	514	532	0.90
Cytoplasmic	533	552	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCSTGEEILA KSTQGATFLM MGQLFGKLVT FVLHNVLVRF LSPRIFGITS FLDFLSSTVL  60
   61 FFSREAIRLA TLRIKTGGDG GRGGEMSAEL QTAVNFANIP MCIGAPLAVV LAVWQYSNLN 120
  121 SYFTQLPFFS WSIYLVLLSI LAELASEPLY VVNQFMLNYR KRSQFEGAAV AASCLVNFAV 180
  181 IYWYENWVNG RGETVHDSYK QEGIAVLAFA LGKVARAMTL LALYYVDYVR HLAHEKLFSL 240
  241 SLTKVRVPGS VYTAYFDSDV LQHFKKVYFQ LCFKHLLTEG DKLIINSLCT VEEQGIYSLL 300
  301 SNYGSLITRM VFAPIEESLL LFLTRLLSDK TQQNLHICMR VLVNLVKFYL YLALVIVIFG 360
  361 PTNSSFLLKF LIGSKWSSTS VLETIRVYCF YLPFLSMNGI LEAFFASVAS GDEILRHSYL 420
  421 MMLLSGVFLL NCWVFLAHFN LSLEGLIFSN IINMTLRIIY CSNYIRGFYK RLFADSKQTS 480
  481 LSSSFAGLKK ILLLCIVVAY VDWSIIGYVQ NIRQLLVNIL LSVTLVLAMA YNERKLLLEF 540
  541 IKKSKPVPVK EN