YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45198530, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRSILSRNA TLHGCRFMSS SSTAGFGKYL ASRGSQLPPP FRKQTSSLNF VTGRTGLLRP  60
   61 YSASRILQEA ASVKGPRKLL NSSKTVGYWL VGTSGLVFGI VVLGGLTRLT ESGLSITEWR 120
  121 PVTGTLPPMN ENDWQEEFRK YQQSPEFQQL NSHISLEEFK FIYFMEWVHR LWGRAIGAVF 180
  181 VLPAVYFAAT RKTSPRVNRR LFLLSLVLGF QGFIGWWMVR SGLDQGQLDE RKSKPTVSQY 240
  241 RLTAHLGTAF VLYMGMLWTG IEILRETKWV KSPAKAMELF QKLDSPALAP VRRMALALTA 300
  301 LTFLTAMSGG LVAGLDAGLI YNTFPHMGDN WLPKQRELMD DTFARKEDKS DKFWRNMFEN 360
  361 PTTVQLNHRI FATTTFCSVL AFHLYCNRRK ALIPKSANRT MHAMMGLVTL QFSLGVATLL 420
  421 YLVPVPLASA HQAGALALLT SALVFAAQLR KPRAPMRLLV NSLHAQQKRA SGQIMSEVSR 480
  481 LAK

Type	Start	End	Confidence
Cytoplasmic	1	85	0.97
Transmembrane Helix	86	107	0.95
Non-Cytoplasmic	108	170	0.97
Transmembrane Helix	171	190	0.95
Cytoplasmic	191	200	0.87
Transmembrane Helix	201	219	0.96
Non-Cytoplasmic	220	241	0.95
Transmembrane Helix	242	261	0.92
Cytoplasmic	262	295	0.93
Transmembrane Helix	296	320	0.87
Non-Cytoplasmic	321	365	0.97
Transmembrane Helix	366	386	0.93
Cytoplasmic	387	400	0.93
Transmembrane Helix	401	423	0.89
Non-Cytoplasmic	424	429	0.75
Transmembrane Helix	430	449	0.94
Cytoplasmic	450	483	0.99