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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|44984080
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTTTEEKL MKLNPTATDA NNYINTDTTA SKPAPPSSTE AGQAIEREKK LDRRQTEKDS  60
   61 VESSKVERPV VDASYVGWKQ IGGWEERDRL TEDDLHWELD RETFLSHVLP AAAYGDWYHS 120
  121 VGIFFLGGFL SFALGYFKFS LSPVFFVMVL TALLYRTSIW KYRGSIRELV QKELTVQKVE 180
  181 DDYESMDWLN NFLDKFWTRI EPNISVMVVD QVNHELAKNP SVPGFIKSLW IDQFTLGVKP 240
  241 PRIDFVRTLQ NTDPDVAVMD WGLSFTPRDL NDLDAKQLKN FVNQKVIVKA KLFGITIPVA 300
  301 VHDIAFKVHA RVRMKMMTAF PHIETVNIQL MDVPDVDFVF KLFGDSIFNW EIMAIPGLLP 360
  361 FVKEMVRKYA GPMLMPPFSF QLNVPQLLSG SALSIGVLEV NVRDALNLKF GRSILLEELD 420
  421 TYLEFSFNSR VVATTKSVAH GSSPKWDEQL LILLDSFTDP LSITLYSKRP KLNDRVLGSI 480
  481 QYNLSSLHEK HHQRNCTGKF LKNSKPIGEL NFDLNFHHTL ESKKLPDGTI EDMPDLNTGI 540
  541 TKIVVEEARS LRGSSSKDVS SFVELYINAK LVETTQTVSK DANPKFDTSH EIVITDRRRT 600
  601 RIKFVVKDAK GGVISTTLQS LNDLIDRTQV DKKWIPLPGN NGELKVTTHW KPVSLDVGSE 660
  661 SGSYVPPIGV LRVFLNKAEE LRNLEKFGKI DPYARVLVNG VNRGRTNAIN STLDPIWNEA 720
  721 IYIPISSPNQ KVTIECMDVE TADKDRTLGK FDIKTSELFQ KGADDRYVEF IDEEPKFGRL 780
  781 VSNKGAKGTV TYYLSFYPAL PILSMEEIHE MDAINENRKK LEAEKAALDP KTTTQEQMKK 840
  841 IESAESELNE LEDLFSNKMK LDLDELLQYN SGVFTFNILG GELPQIGSYV QAFFDSMGHP 900
  901 KYSSQKFSTK TIRPGSTAGD CMIKELEWSV TTFRVTKNPS NNRAENCLCE VSIPTIELLK 960
  961 NCYYKPSIVT LTGSASAKVM LQVAWFPVLA SRLPQADLIT NTGDLTLEVL NAVRLLPADR1020
 1021 NGKSDPYVKF YLDNSDEVIY KTKTQKKTLE PVWNENTSLQ LNNRINNYLR IKVMDWDAGN1080
 1081 SDDLIGTATI ALAEVDPDSE TPMEVQLTGP NGEDGGILYL NFKFSPRYTV SVTKVETKVG1140
 1141 DFANKGLSAG LSAGTSVIGG GLGAVGKLKK GILGGGKKKE KDHDNKVND

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle