YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44983582
Protein type:	Transmembrane
Type Confidence:	0.59
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDEQEPLLK EETNGAPLEM RTVVSGTAVV PAIPGNPDSL MPTGIPECSS TISSAIAETP  60
   61 IGSSGSATGN TATTLLLADN KGHKSYMQKA GVSISAPVRS GPKVITGSRV GPQRTSRTAQ 120
  121 KLKLLPEEPF QRSQEQEDDS VDREVYSQVN RITDKPARRD AEKLGKSHRH LLPRVTAYCT 180
  181 ASSYNMKELV RWLKDCKRTH HTHPKLFDEC LYTPFIYTDW RGDKRFEHED VIRLDDEGGE 240
  241 INVSDKQPDL FIFEYGVVVM WGFTEREEKA FLNDLERFEK EKLAEEDVQV EEFNYYITQS 300
  301 YQPRIYNDFI TLRDGSNYMI KLSISHAISQ SVKISLFEEL VDNTIEDTQD IPQEIASSGK 360
  361 VSMSKADIMK SIGELFILRI NINLHGSVLD SPEIMWSEPQ LEPIYQATRG YLEINQRVAL 420
  421 LNQRLEVVSD LLQMLKEQLG HSHEENLEFI VILLLGVEVL ISVVNIIVDI VADTK

Type	Start	End	Confidence
Non-Cytoplasmic	1	448	0.96
Transmembrane Helix	449	471	0.54
Cytoplasmic	472	475	0.49