YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TIM54_ASHGO
Protein type:	Transmembrane
Type Confidence:	0.66
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMGEFKHPPQ EKQKMSSTKK AGYSNPAFAA MGIPALRLPG PKWCAFWLVV GAGIAGVVYD  60
   61 KREQRRICKH YSSLVKDQGA AHMDTWLKPR RLTVFVAPPP GDYLETSMKV WRRYVKQVLF 120
  121 EAGLDYEVFT EERQGVIRHE VAERVRQLRR DIAAAEAAEQ RALDEKRWLN RMRSWWRREK 180
  181 LSEEELERIR AQKFRDEFTY KQLLGVFYKN APLREQKVWD ADALVEDPVL AGGVICIGRG 240
  241 AYKEYIAGIH EGTLGPLDPP TLTPEAPTEL SVAAEDLTQA PEQSEPSAAV EALKQALEQA 300
  301 EHSPAEPDSA ATDAPDEKSN NAHAPPPAPY VSPDEYSSLS LSQELVGDVH HPSSHIPALF 360
  361 HQPLLVIPVP NLSGFLQTPR KIYRFYTRRY YAEECCKAAA AMVLQTIRPF QPDDLNLGIS 420
  421 EEEDWPRRWV EQGRERKSEW VQDLKADPRV IAELHVVDPA LMADLAATMN LN

Type	Start	End	Confidence
Cytoplasmic	1	39	0.45
Transmembrane Helix	40	59	0.53
Non-Cytoplasmic	60	472	0.70