YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44983276
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSLRGHHTK ERGSGHGRGE CGVMQGMLLD KMMEKVLGMA IPPAGEAGGG AIESRVQAGR  60
   61 ARPGLSVPIM SRNFVQMNSR LSFPFQVVNE VIRIANWEST ACTLSVGMLY SFVVLRPLVT 120
  121 LSSAPMFYIL FAVMVPYYMQ IHAPEPWEEL GANPIPAAGP ALKEPDLPRP VPELSKEFIL 180
  181 NLTDLQNHMV LYVVCYDFIT GLLAKFAFFA DENVSAAAFV GLLVLGVFNM LFIESLFRWI 240
  241 PLKLLLLACG WGFLIMLHPS CRDACFDYIS SEETRLKVLT MTTKIEQLIN DYWDYCEPRE 300
  301 TRQAAIIEIK KFDRRTKEVA HCRFSSDDYT LLSKLRIAEE PIDSSATSLD DVKPPLDWKW 360
  361 LGKYDWVLDL EPRQWVTDGF VQYVDIDAET KWVYDLNFDG TRGQYRRRRW IRLCTRNRSV 420
  421 QENANVDTID DDNSDDYELV DYSGCTGVSQ NSMHGSVKSC HSISEPTDQI VVERLRSHTL 480
  481 SPAANASVSS ADSTASATIA TPNKNVEQGS RAIKSLTDFL NING

Type	Start	End	Confidence
Cytoplasmic	1	112	0.84
Transmembrane Helix	113	138	0.74
Non-Cytoplasmic	139	213	0.61
Transmembrane Helix	214	233	0.92
Cytoplasmic	234	238	0.60
Transmembrane Helix	239	261	0.75
Non-Cytoplasmic	262	524	0.73