YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|33086606, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFAVGALLA CAALGLCLAV PDKTVKWCAV SEHENTKCIS FRDHMKTVLP ADGPRLACVK  60
   61 KTSYQDCIKA ISGGEADAIT LDGGWVYDAG LTPNNLKPVA AEFYGSLEHP QTHYLAVAVV 120
  121 KKGTDFQLNQ LQGKKSCHTG LGRSAGWIIP IGLLFCNLPE PRKPLEKDPV AFPQLCQLCP 180
  181 GCGCSPTQPF FGYVGAFKCL RDGGGDVAFV KHTTIFEVLP QKADRDQYEL LCLDNTRKPV 240
  241 DQYEDCYLAR IPSHAVVARN GDGKEDLIWE ILKVAQEHFG KGKSKDFQLF GSPLGKDLLF 300
  301 KDSAFGLLRV PPRMDYRLYL GHSYVTAIRN QREGVCPEGS IDSAPVKWCA LSHQERAKCD 360
  361 EWSVSSNGQI ECESAESTED CIDKIVNGEA DAMSLDGGHA YIAGQCGLVP VMAENYDISS 420
  421 CTNPQSDVFP KGYYAVAVVK ASDSSINWNN LKGKKSCHTG VDRTAGWNIP MGLLFSRINH 480
  481 CKFDEFFSQG CAPGYKKNST LCDLCIGPAK CAPNNREGYN GYTGAFQCLV EKGDVAFVKH 540
  541 QTVLENTNGK NTAAWAKDLK QEDFQLLCPD GTKKPVTEFA TCHLAQAPNH VVVSRKEKAA 600
  601 RVSTVLTAQK DLFWKGDKDC TGNFCLFRSS TKDLLFRDDT KCLTKLPEGT TYEEYLGAEY 660
  661 LQAVGNIRKC STSPVITPKN YNSRDAQRPA AAWSLGPRIF GDPGRPRTSF MASANTRRVG 720
  721 DGAGGAFQPY LDSLRQELQQ RDPTLLSVAV AVLAVLLTLV FWKFIWSRKS SQRAVLFVGL 780
  781 CDSGKTLLFV RLLTGQYRDT QTSITDSSAI YKVNNNRGNS LTLIDLPGHE SLRLQFLDRF 840
  841 KSSARAVVFV VDSATFQREV KDVAEFLYQV LIDSMALKNT PAFLVACNKQ DIAMAKSAKL 900
  901 IQQQLEKELN TLRVTRSAAP STLDSSSTAP AQLGKKGKEF EFSQLPLKVE FLECSAKGGR 960
  961 GDAGSADVQD LEKWLAKIA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle