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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|33086638
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFAVGALLA CAALGLCLAV PDKTVKWCAV SEHENTKCIS FRDHMKTVLP ADGPRLACVK  60
   61 KTSYQDCIKA ISGGEADAIT LDGGWVYDAG LTPNNLKPVA AEFYGSLEHP QTHYLAVAVV 120
  121 KKGTDFQLNQ LQGKKSCHTG LGRSAGWIIP IGLLFCNLPE PRKPLEKDPV AFPQLCQLCP 180
  181 GCGCSPTQPF FGYVGAFKCL RDGGGDVAFV KHTTIFEVLP QKADRDQYEL LCLDNTRKPV 240
  241 DQYEDCYLAR IPSHAVVARN GDGKEDLIWE ILKVAQEHFG KGKSKDFQLF GSPLGKDLLF 300
  301 KDSAFGLLRV PPRMDYRLYL GHSYVTAIRN QREGVCPEGS IDSAPVKWCA LSHQERAKCD 360
  361 EWSVSSNGQI ECESAESTED CIDKIVNGEA DAMSLDGGHA YIAGQCGLVP VMAENYDISS 420
  421 CTNPQSDVFP KGYYAVAVVK ASDSSINWNN LKGKKSCHTG VDRTAGXXNI PMGLLFSRIN 480
  481 HCKFDEFFSQ GCAPGYKKNS TLCDLCIGPA KCAPNNREGY NGYTGAFQCL VEKGDVAFVK 540
  541 HQTVLENTNG KNTAAWAKDL KQEDFQLLCP DGTKKPVTEF ATCHLAQAPN HVVVSRKEKA 600
  601 ARVSTVLTAQ KDLFWKGDKD CTGNFCLFRS STKDLLFRDD TKCLTKLPEG TTYEEYLGAE 660
  661 YLQAVGNIRK CSTSPVITPK NYNSRDAQRP AAAWSLGPRI FGDPGRPRTS FMASANTRRV 720
  721 GDGAGGAFQP YLDSLRQELQ QRDPTLLSVA VAVLAVLLTL VFWKFIWSRK SSQRAVLFVG 780
  781 LCDSGKTLLF VRLLTGQYRD TQTSITDSSA IYKVNNNRGN SLTLIDLPGH ESLRLQFLDR 840
  841 FKSSARAVVF VVDSATFQRE VKDVAEFLYQ VLIDSMALKN TPAFLVACNK QDIAMAKSAK 900
  901 LIQQQLEKEL NTLRVTRSAA PSTLDSSSTA PAQLGKKGKE FEFSQLPLKV EFLECSAKGG 960
  961 RGDAGSADVQ DLEKWLAKIA 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle