YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33086478
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	58	0.58
Transmembrane Helix	59	81	0.80
Non-Cytoplasmic	82	88	0.37
Transmembrane Helix	89	112	0.86
Cytoplasmic	113	158	0.69
Transmembrane Helix	159	178	0.89
Non-Cytoplasmic	179	223	0.91
Transmembrane Helix	224	243	0.92
Cytoplasmic	244	250	0.75
Transmembrane Helix	251	271	0.90
Non-Cytoplasmic	272	282	0.91
Transmembrane Helix	283	304	0.91
Cytoplasmic	305	443	0.85
Transmembrane Helix	444	462	0.40
Non-Cytoplasmic	463	494	0.62
Transmembrane Helix	495	515	0.84
Cytoplasmic	516	706	0.63
Transmembrane Helix	707	723	0.68
Non-Cytoplasmic	724	733	0.47

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQNDLMGTA EDFADQFLRV TKQYLPHVAR LCLISTFLED GIRMWFQWSE QRDYIDTTWS  60
   61 CGYLLASSFV FLNLLGQLTG CVLVLSRNFV QYACFGLFGI IALQTIAYSI LWDLKFLMRN 120
  121 LALGGGLLLL LAESRSEGKS MFAGVPTMRE SSPKQYMQLG GRVLLVLMFM TLLHFDASFF 180
  181 SSSVYTVGQY SFVYHMEKQG WQKGLLGRCT QHDDGSLNVF FESVQIIQNI VGTALMILVA 240
  241 IGFKTKLAAL TLVVWLFAIN VYFNAFWTIP VYKPMHDFLK YDFFQTMSVI GGLLLVVALG 300
  301 PGGVSMDEKK KEWINEDIRE TPSQENSTVL EGWVLLLAQV LDVSWLDAFY WVKGPVPSWP 360
  361 YFSPSRFSFD LVGVGQQSQA GVLTQKCKHI RRWFVHDRRR HLTPQPPREA ERGPGRKQVS 420
  421 PPRKCSKMAA VMALTVLRSR ITRWPQWACA GPAPFCAVRR SVFGFSVRSG MVCRPHRCCS 480
  481 STAETAAAKA EDDSFLQWFL LFIPATAFGL GTWQVQRRKW KLKLIAELES RVMAEPIPLP 540
  541 ADPMELKNLE YRPVKVRGHF DHSKELYIMP RTMVDPVREA RDAGRLSSTE SGAYVVTPFH 600
  601 CSDLGVTILV NRGFVPRKKV NPETRQQGQV LGEVDLVGIV RLTENRKPFV PENNPERSLW 660
  661 YYRDLDAMAK RTGTDPIFID ADFNSTTPGG PIGGQTRVTL RNEHMQYIIT WYGLCAATSY 720
  721 LWFRKFVRRT PGV