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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|45185256, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.83
Topology Confidence: 0.75
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLPSTALAV ALLAAAKVVV ADSEKFSLES LSGAADLKSV SLQLKSGKLV FSPGGKISVL  60
   61 VTDAGRLSFD GNKFAVIEDS GAITFGDEKE GTLGFAVRDG RLTFRSIDSF SATKVNGEYT 120
  121 LSVGWNADAT SVGIRAVKDG SPVKDFTPVV SIIDKPKGID IGSLCSKLEK LCHWSHTPSC 180
  181 STVVPPPQPT TSGKPGESTA VPPPQPTTSG KPGESTAVPP PKPTTSGKPG PSTTAVPPPM 240
  241 PTTSGKPGES TVADPPPKPT TSGKPGESTV IPPPKPTTSG KPGESTAVVP PPKPTTSGKP 300
  301 GESTVIPPPK PTTSGKPGPS TTAVPPPKPT TSGKPGPSTT AVVPPPKPTT SGKPGESTVI 360
  361 PPPKPTTSGK PGPSTTAVVP PPKPTTSGKP GPSTTAVPPP KPTTFGKPGP STTAVPPPKP 420
  421 TTSGKPGPST TAVPPPKPTT SGKPGPSTTA VPPPQPTTSG KPGPSTTAVP PPKPTTSGKP 480
  481 GESTVIPPPK PTTSGKPGPS TTAVVPPPKP TTSGKPGEST AVVPPPKPTT SGKPGPSTTA 540
  541 VPPPKPTTSG KPGPSTTAVP PPKPTTSGKP GPSTTAVPPP KPTTSGKPGE STAVPPPKPT 600
  601 TSGKPGPSTT AVPPPKPTNP GKPCTHSHRP GETCTHHPGK PTSHGPPPQP TAPGHTTGHV 660
  661 PPPKPTAPGH TTGHVPHPKP DHPHHPGKPC THSHRPGETC THHHPGQSTG HVEHPKPDHP 720
  721 HHPGKPCTHS HRAGETCTHH HRGQSTGHGP HPKPDHPHHP GKPCTHSHRA GETCTHHHPG 780
  781 QSTGHGPHPK PDHPHHPGKP CTHSQRAGEP CTHHPGKPTG RAPPQPNKPH HTRKPCTHSH 840
  841 RPGEPCTHHP GQPKPTAKPP AAQPGKPAPP VQPKPTAKPH GGHPGGHRPG GSKDCHETKT 900
  901 YKGGIRVDKG PHHTKGGGIV HEGQATKIAG HGAGPAATAA PGAGGHGTSG GGASGHGGAS 960
  961 GHGKKASGHG GVSGHGGVSG HGGASGHGGA SGGKKASGSG TRGAGAAHHR GSGSSKGSGS1020
 1021 GAHRGGSRSG GHTGSRPKSG GHRGGGRSGG HRGGRRDLGD DIVDYQQDVQ MQKRAETTAH1080
 1081 PVSVTTSHFT SHAVTGSQSS AHAIATTNGA GAGFMSIPFG AVVLGVAAIL L

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle