YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44980800
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLPLIIRTS AARHCRYVGI ARLGLPRWTP FKAVFPALGC QPVRRTLAGP ARGPEEHEQT  60
   61 LRAARAAKRD QLLAQTPSSW ERLRIRIKWA LARSTKPFNS DDISAFVSWI LVSHALLIIL 120
  121 GTTTFASLVI YLMNTVLAQE YVATQVGNFL TKNTALTVVF ENAIVPDWSS GKITFNKVFV 180
  181 SRRPKQLQGF SKGSQHEAVE RAKLALSERL LVSGEEFDDG NYTQFDLTID QVEISLNFGK 240
  241 WINGKGILDE VTINGLRGVV DRTHVMWKDG DDPRKYLNVH QPGDFEISTF RMNDVLFTLY 300
  301 QPGRFRPFQV SVFNCELPQL RKHWLFFDIL NAHSMSGTYD NAMFMIHRRY KEDQSSESPL 360
  361 WRKFTRMRVD NLNVDHLNAG MKGPFGWITS GKVDMIGDIL LPEEGLDGSD LSDMLAIIGD 420
  421 RLLKEARRHS DILPFQMPDP GDIDPHNYFV MDFFLRLHNV RAEVPLFTPE LSYINNALIR 480
  481 PIVGYINSKR SYIPIQCRVV KNLADFEGSW TIYDSKLMDD LSAEVYDAFA DYVADQERKN 540
  541 LRMKRVGFWS LHIIIQLILM SLGAIA

Type	Start	End	Confidence
Non-Cytoplasmic	1	105	0.46
Transmembrane Helix	106	132	0.73
Cytoplasmic	133	545	0.64
Transmembrane Helix	546	565	0.78
Non-Cytoplasmic	566	566	0.85