YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|44980484, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.92
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	83	0.98
Transmembrane Helix	84	105	0.94
Cytoplasmic	106	112	0.88
Transmembrane Helix	113	136	0.90
Non-Cytoplasmic	137	148	0.83
Transmembrane Helix	149	169	0.90
Cytoplasmic	170	275	0.96
Transmembrane Helix	276	293	0.90
Non-Cytoplasmic	294	312	0.77
Transmembrane Helix	313	337	0.84
Cytoplasmic	338	354	0.94
Transmembrane Helix	355	376	0.84
Non-Cytoplasmic	377	394	0.86
Transmembrane Helix	395	418	0.82
Cytoplasmic	419	444	0.83
Transmembrane Helix	445	463	0.78
Non-Cytoplasmic	464	476	0.75
Transmembrane Helix	477	495	0.94
Cytoplasmic	496	504	0.79
Transmembrane Helix	505	523	0.88
Non-Cytoplasmic	524	541	0.80
Transmembrane Helix	542	564	0.89
Cytoplasmic	565	579	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNLATVYLT VLAAAVAAQH GSHSAHGSTG QLNNNSIHPV AHESHHMHGM PILETQLTAA  60
   61 ERAYWEQYDT MTYFNAPSKR KRGLWMHAAA VAGTALVLYP ASLVLAESES RWYLVCLAAH 120
  121 CLVLWTGLAA LAVYAASLPS TLYPGNVYGT LSWIVAIVSV SHAASAVVVR AAKWLAPDAA 180
  181 PYAIPLELLR PERSSSSHEH SQESIDEHEA NVGKMYSPGE ETAELAPDVE QATGGLRDGY 240
  241 RRERMQAPAL LRHPIVQQMA ERFGTVFGAV YRITNSLQLL LLLVYAAVGF AIGNRFAQGK 300
  301 YVFNFLAHWI KGGIFFLLGV LSLARYCGFG AAHGWAWNAI AYKARREDVS RWRRLFPQGT 360
  361 TMEGVESFLI FFYGSTNVFL EHLANPGGRW EAKDLQHVSI AFMYIGCGLC GLIVERRLAS 420
  421 WRCVAAARVV GDCDEGSPGF SPNPFPALTV FFTGILMSQH AQASEVSTVI HAQWGKLLAY 480
  481 GSFFRIFTFL LLLLLPRKGK GPAHPFPELV TSFCLVSGGM IFMESTDQVI EALEYRGLTP 540
  541 MFTFNLSVGT TVLVMAWIML LFSWRDAMCA QSSAHRVAR