YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COX3_CANAL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNNVRGYLQ LHPFHLVGPS PWPIFTSFSL MDLALSLGLT AHGYIASIWP IFLAIIAVLY  60
   61 SMTLWFKDII AESTYLGDHT LAVKRGLNQG FLLFVVSEIL IFASLFWAYL HSALNPTMDL 120
  121 GMQWPPVGIP TISPAELPLL NTIILLASGV TVTYAHHALI NGNRTNTLYG FTYTTILIAL 180
  181 FVYFQYLEYS YAGFTLSDGV YGSTFFSLTG LHGLHMIMLT IMLMICTWRV YNYDFTNTSH 240
  241 VGAETTILYL HVLDVIWLFI YIIVYWWGS

Type	Start	End	Confidence
Cytoplasmic	1	15	0.81
Transmembrane Helix	16	35	0.78
Non-Cytoplasmic	36	44	0.59
Transmembrane Helix	45	66	0.89
Cytoplasmic	67	89	0.89
Transmembrane Helix	90	111	0.93
Non-Cytoplasmic	112	136	0.87
Transmembrane Helix	137	156	0.91
Cytoplasmic	157	166	0.80
Transmembrane Helix	167	187	0.93
Non-Cytoplasmic	188	207	0.92
Transmembrane Helix	208	231	0.86
Cytoplasmic	232	246	0.89
Transmembrane Helix	247	267	0.93
Non-Cytoplasmic	268	269	0.85