YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|255098386
Protein type:	Globular with Signal Peptide
Type Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNKSRMMPA VLAVAVVVAF LTTGCIRWST QSRPVVNGPA AAEFAVALRN RVSTDAMMAH  60
   61 LSKLQDIANA NDGTRAVGTP GYQASVDYVV NTLRNSGFDV QTPEFSARVF KAEKGVVTLG 120
  121 GNTVEARALE YSLGTPPDGV TGPLVAAPAD DSPGCSPSDY DRLPVSGAVV LVDRGVCPFA 180
  181 QKEDAAAQRG AVALIIADNI DEQAMGGTLG ANTDVKIPVV SVTKSVGFQL RGQSGPTTVK 240
  241 LTASTQSFKA RNVIAQTKTG SSANVVMAGA HLDSVPEGPG INDNGSGVAA VLETAVQLGN 300
  301 SPHVSNAVRF AFWGAEEFGL IGSRNYVESL DIDALKGIAL YLNFDMLASP NPGYFTYDGD 360
  361 QSLPLDARGQ PVVPEGSAGI ERTFVAYLKM AGKTAQDTSF DGRSDYDGFT LAGIPSGGLF 420
  421 SGAEVKKSAE QAELWGGTAD EPFDPNYHQK TDTLDHIDRT ALGINGAGVA YAVGLYAQDL 480
  481 GGPNGVPVMA DRTRHLIAKP

Type	Start	End	Confidence
Signal Peptide	1	25	0.89
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	500	0.99