YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11347452
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.97
Transmembrane Helix	20	41	0.92
Non-Cytoplasmic	42	47	0.79
Transmembrane Helix	48	67	0.92
Cytoplasmic	68	85	0.91
Transmembrane Helix	86	106	0.90
Non-Cytoplasmic	107	126	0.88
Transmembrane Helix	127	146	0.93
Cytoplasmic	147	155	0.85
Transmembrane Helix	156	177	0.93
Non-Cytoplasmic	178	199	0.88
Transmembrane Helix	200	222	0.90
Cytoplasmic	223	240	0.92
Transmembrane Helix	241	262	0.92
Non-Cytoplasmic	263	283	0.91
Transmembrane Helix	284	309	0.79
Cytoplasmic	310	340	0.93
Transmembrane Helix	341	363	0.92
Non-Cytoplasmic	364	369	0.84
Transmembrane Helix	370	391	0.92
Cytoplasmic	392	408	0.90
Transmembrane Helix	409	432	0.85
Non-Cytoplasmic	433	436	0.68
Transmembrane Helix	437	457	0.85
Cytoplasmic	458	469	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGQHLHQGE LKRGLKNRHI QLIALGGAIG TGLFLGSAGV IKTAGPSMIL GYAIGGFIAF  60
   61 LIMRQLGEMI VEEPVAGSFS HFAHKYWGGF AGFLSGWNYW VLYILVGMSE LTAVGKYIQY 120
  121 WWPDVPTWAT AAAFFVLINA INLANVKAFG ETEFWFAIIK VAAIVGMILL GIYLLVGGGG 180
  181 GPQASVSNLW DRGGFFPNGL SGLVMTLAII MFSFGGLELV GITAAEASEP RKVIPKAINQ 240
  241 VIYRILIFYI GALAVLLSLY PWDQLVETIN ASGDDYSGSP FVQIFSLIGS GTAANILNFV 300
  301 VLTAALSVYN SGVYCNSRML YGLAAQGDAP KVLMSVDRRG VPVLSILVSA LITFLCVIVN 360
  361 YVLPHKALEL LMSLVVAALV INWAMISLSH LKFRAAMKRQ GVDTFFKALW SPFSNYLCLA 420
  421 FVLFILGIML MIPGINISVY AIPFWLLLMW LCYRVKLSLA ERRGLGQQA